Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            35   0.035
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         30   1.3  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   3.1  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)                      29   3.1  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_44857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      28   5.4  
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   7.1  
SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)                  27   9.4  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       27   9.4  
SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = -2

Query: 505 VKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 410
           +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 267 IKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 349 THELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 221
           T EL+  T+ NPL  TPAL++RG   T R+   + + N+   IDF
Sbjct: 296 TQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 94  CHPYSY--NGCPALQTETHYCFTAEIGRGRWYLPARTHKRSYH 216
           CHP     N C   +T+ + C   +  +  WY P++T    YH
Sbjct: 437 CHPTKTQANWCHPTKTQANLCHPTKT-QANWYHPSKTQANWYH 478


>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1690

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 472 DALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATK 329
           D LKK +  +QK     +L +AS E  EEK +  +   + F H++A K
Sbjct: 403 DGLKKRMEQIQK-----ELQQASSELEEEKKKTENLLSSIFPHDVANK 445


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 59  PLNTWWAVSSSNHLSKKKK 3
           P+ TW   S SNH S KKK
Sbjct: 99  PMKTWLRASDSNHKSSKKK 117


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = -2

Query: 349 THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGGRTSCESARVGTTA 173
           THE       L DT    T  HDTT     L   T N  +  D TG  T         T 
Sbjct: 515 THETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGNDTQLHDTTGNKTR 574

Query: 172 P 170
           P
Sbjct: 575 P 575


>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
          Length = 390

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 202 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 83
           C+S    TT+ C++L    NA        RC  +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = -1

Query: 431 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 279
           P DRP        +   P  RS   S Y   RD    A +  C D  R RH
Sbjct: 458 PRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRH 508


>SB_44857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 353 CCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDXGLFQS---VERARVQHLLLDLGG 514
           CC+L +   E L    +     +GR D   + + G F     +   R +HL+  +GG
Sbjct: 85  CCILRMSMTEALAGATINAAASLGRADTHGSLEVGKFADMVVINAERWEHLIYQIGG 141


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 403 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 284
           +E    K+ AT+    AFTH+L    KP  +SD P +  +G+
Sbjct: 22  EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 347 CKCCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDXGLFQS 469
           C  CLL  G  + L DGL RR    G ++VLL  D G  +S
Sbjct: 348 CIACLLFGGSRKRLPDGLTRR----GDINVLLLGDPGTAKS 384


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 108 LQRLPRPSNRNALLLHGRNRQGA 176
           +QR P P+ RN++ LHG   Q A
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQTA 52


>SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 481 SSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATKPN 323
           SSF A  + L+    Y + TD  E +   ++ +  ATD   T+  H    +P+
Sbjct: 244 SSFTAEIRDLIETSSYTKDTDFDEETSSLLKSQTDATDDTMTSDEHCRTQEPS 296


>SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)
          Length = 886

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 413 GSVSGGRRREAPRHRSPINSIYTRARDETE 324
           G V   +R  +P  RS   S   ++RDETE
Sbjct: 62  GQVCNNKREASPNSRSGAGSARKKSRDETE 91


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 213 PPVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARS 383
           P +  II+I+++ + NNT  L  SW  V  A    +        C     WR +AR+
Sbjct: 125 PLIIIIIVIIYIIIINNTGILDRSWAGVQTALKPRANCAMTCQHC-----WRILARN 176


>SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 26/105 (24%), Positives = 43/105 (40%)
 Frame = +3

Query: 204 EVLPPVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARS 383
           +V PP   I+ I      +NT  L ++ P + R G         A S  NAV  RS+   
Sbjct: 400 QVQPPDYPILPISVAGCASNTSALNITMPHIARRGADLLAIRLGARSTGNAV--RSLRGV 457

Query: 384 FSSTAS*DASERSVAWMYF*TPTRDFFRASNELEYNIFFLTLGGV 518
               +  D    S   +++  P+ +F    +E  + +F  +  GV
Sbjct: 458 VRIESLRDRYIYSFRGLFY-WPSHNFIHDGSERVFPLFEFSSRGV 501


>SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 413 GSVSGGRRREAPRHRSPINSIYTRARDETE 324
           G V   +R  +P  RS   S   ++RDETE
Sbjct: 67  GQVCNNKREASPNSRSGAGSARKKSRDETE 96


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 87  INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEV 209
           ++VPP  L R  RP N   L + G +   + +P +  ++++
Sbjct: 299 LSVPPEQLSRNERPKNTTTLFVSGVDTMASKLPVQRSARDI 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,123
Number of Sequences: 59808
Number of extensions: 347692
Number of successful extensions: 946
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)