Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310D10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 34 0.054
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 34 0.054
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 34 0.054
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 32 0.29
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 32 0.29
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical ... 29 2.0
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 27 6.2
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 27 6.2
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 34.3 bits (75), Expect = 0.054
Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 365
V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 104 VRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 34.3 bits (75), Expect = 0.054
Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 365
V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 104 VRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 34.3 bits (75), Expect = 0.054
Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 365
V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 164 VRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 211
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 398
+KKKM+Y+SS A+K SL G Q +D SE S +
Sbjct: 116 IKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 380
+KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 116 IKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 380
+KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 116 IKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 407 RFREVGRLDVLLNSDXGLFQSVERARVQHLLLD 505
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical
protein Y54F10AM.6 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 296 RQGRSVGERVRFRRELVCKCC 358
R+GR G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 416 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 318
L ++S R+ P R P+ ++Y R +D PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 416 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 318
L ++S R+ P R P+ ++Y R +D PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,965
Number of Sequences: 27780
Number of extensions: 251347
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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