Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310D10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 43 1e-04
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 42 2e-04
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 42 3e-04
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 40 8e-04
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 40 0.001
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 40 0.001
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 40 0.001
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 38 0.004
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 38 0.004
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 38 0.005
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 37 0.007
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 36 0.012
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 34 0.050
At5g63320.1 68418.m07946 expressed protein 29 2.5
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 2.5
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 2.5
At3g23740.1 68416.m02985 expressed protein 28 4.4
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 4.4
At5g28810.1 68418.m03542 hypothetical protein 27 5.8
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 5.8
At1g64430.1 68414.m07302 expressed protein 27 5.8
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to C... 27 7.7
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 380
K++KKM+YSS+ D K+ L G+Q ATDL++ S +A+ ++
Sbjct: 90 KMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 380
+V+ KMLY+SS D K+ + G+Q +QATD SE S + ++ +L
Sbjct: 96 RVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 380
+V+ KMLY+SS D K+ L G+Q +QATD SE S + ++ ++
Sbjct: 96 RVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRV 138
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 40.3 bits (90), Expect = 8e-04
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 383
+V+ KM+Y+SS D K+ L G+Q +QATD SE S + ++ +
Sbjct: 94 RVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSR 135
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 383
+V+ KM+Y+SS D K+ L G+Q +QATD SE S + ++ +
Sbjct: 87 RVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 128
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 380
KV+ KM+Y+SS D K+ L G+Q +QATD +E + ++ ++
Sbjct: 89 KVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRV 131
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 380
KV+ KM+Y+SS D K+ L G+Q +QATD +E + ++ ++
Sbjct: 96 KVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 410
KV+ KM+Y+SS D K+ L G+Q +QATD +E
Sbjct: 96 KVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 383
KV+ KM+Y+SS D K+ L G+Q +QATD +E + + +
Sbjct: 94 KVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSR 135
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -2
Query: 505 VKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 383
++ K+LYS+S D L + L G+ IQATD +E E + E+
Sbjct: 104 IRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRER 144
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 383
+V+ KM+Y+SS D K+ L G+Q +QATD +E + + +
Sbjct: 96 RVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSR 137
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 377
K++ K+LY++S D L++ L G+ +QATD +E + ++++ +
Sbjct: 100 KIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 34.3 bits (75), Expect = 0.050
Identities = 13/44 (29%), Positives = 30/44 (68%)
Frame = -2
Query: 508 KVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 377
++++KM+Y++S L++ L GV +QATD +E + ++++ +
Sbjct: 87 RIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 130
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -1
Query: 503 QEEDVVL*LVRRSEKVPXRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYTRARD 333
QE +VV + +E V EVHP DR G R RE PR S+ +A+D
Sbjct: 316 QETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSEKAQD 374
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 419 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 285
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 167 AGGGGTYPRGLTRGPTTSKINHINTIRFP 253
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -1
Query: 512 PQGQEEDVVL*LVRRSEKVPXRSSEVHPSD--RPLGSVSGGRRREAPRHRSPINSIYTRA 339
PQ E+V+ + SE + EV S+ R G+ S P R P+N +
Sbjct: 245 PQKNTEEVISSPMLNSESDNEGTQEVVTSNVTRESGTSSDENEEPLPCERVPVNLEQSDP 304
Query: 338 RDETEPALRHSCPD 297
E E ++H PD
Sbjct: 305 DKEQETQIKHVIPD 318
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 75 DIYNIN-VPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVF 251
DI I P I + L S++ L+ R + D + L P K ++ +LF F
Sbjct: 165 DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEK-LLELLFRF 223
Query: 252 LCNNTKRLVVSWPRVVRAG 308
C LV SWP R G
Sbjct: 224 TCFIGDALVESWPEADRKG 242
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 306 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 398
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 216 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 389
PV S + + +V + N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 293 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 382
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
Length = 543
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 404 RRFREVGRLDVLLNSDXGLFQSVERARVQHLLLDL 508
R R +G L++ + F SV + ++HLLL L
Sbjct: 171 RNLRRIGTLEIFSSHKLNGFLSVRKDEIRHLLLRL 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,291
Number of Sequences: 28952
Number of extensions: 243258
Number of successful extensions: 711
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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