Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310D09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 0.97
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 1.3
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 27 1.7
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 27 1.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 1.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 3.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 3.0
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 3.0
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 26 3.9
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.9
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 5.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 5.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 6.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 6.8
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 9.0
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 9.0
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 9.0
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 0.97
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 162 KPFNLPTRQEAAPPATSYGVPDDSYQAPANT----YGLPQAAPDTEYGVPRDEETTTENA 329
+P NLP + A PAT YG+PD + T G P A ++ P D ++ N
Sbjct: 175 QPHNLPAQ---AQPATIYGIPDALHTTQNGTTIHVTGTPPGAV-SQRSEP-DSRLSSMNE 229
Query: 330 ENLKVEGINEKLEEAPK 380
L +L+ AP+
Sbjct: 230 MQLLASAAANQLDAAPR 246
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 82 TTGSSDRRWNHKLLLTRPMLLPGSDQRSRSTCPLVKKQLHRPHLTASPTTATKHQPTP 255
T+ SS + + L L + ++P + Q+ T + KQ PH + P + PTP
Sbjct: 228 TSPSSAKEFKQLLTLKQSTIIPRTPQK---TVRSIVKQTSSPHSSKMPKHSLPSSPTP 282
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 142 LPGSD--QRSRSTCPLVKKQLHRPHLTASPTTATKHQPTPTVYHKQL 276
+PGS QR+ S +KK L L + KHQ Y+KQL
Sbjct: 281 IPGSTTVQRAESNLSALKKSLSSEQLEEAKKVLDKHQIFGLRYNKQL 327
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 228 DSYQAPANTYGLPQAAPDTEYGVPRDEETTTENAENLKVEGINEKLEEAPKSDAEVVSSQ 407
DSY + N Y P AP T P+ + + + E I+ + E K D +++S Q
Sbjct: 234 DSYNSTNNYYSSPTMAPSTGGAKPKSDLDAPRDVRDSDWELISLR-NELSKLDEKILSLQ 292
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 465 PSGTVPAAAEIQAGGRSKSPANSPLRRHFSGP 370
PSG VP+ AE QA S P P+ GP
Sbjct: 182 PSGNVPSPAEFQAMMASGFPPFMPIPPPIGGP 213
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 178 PLVKKQLHRPHLTASPTTATKHQPTP 255
P +K Q+ T +PT A KH P P
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPP 746
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Frame = +3
Query: 156 PAKPFNLPTRQEAAPPAT-----SYGVPDDSYQAPANTYGLPQAAPDTEYGVPRDEETTT 320
P LP + PP+ S+G + + A P ++ G + EET+
Sbjct: 360 PLSSKKLPASSDVKPPSAAAVGFSFGTTTNPFSFAAPKSSFPTSSTPASVGAEKSEETSN 419
Query: 321 ENAENLKVEGINEKLEEAPKSDAEVVSSQG 410
N + + E + +S+ +VS +G
Sbjct: 420 GNKSEQEEK---ENGNDETRSNDSLVSGKG 446
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 261 LPQAAPDTEYGVPRDEETTTENAENLKVEGINEKLEE 371
LP D + + + E T+N+E L E + EKLEE
Sbjct: 420 LPHVHWDVDPFILKLSEELTQNSETLCKEKLKEKLEE 456
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 3.9
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +3
Query: 183 RQEAAPPATSYGVPDDSYQAPAN---TYGLPQAAPDTE--YGVPRDEETTTENAENL--K 341
RQ A+P T+Y +D + + A+ +Y L + T Y P D T L
Sbjct: 27 RQPASPTPTAYLNSNDGHSSAASSPGSYSLKKKRSKTSLVYSQPADSGVGTHYLSQLHYA 86
Query: 342 VEGINEKLEEAPKSDAEVVS 401
VE + E+ E PK+ E+ S
Sbjct: 87 VEYLKERNE--PKTAEEIAS 104
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 192 AAPPATSYGVPDDSYQAPANTYGLPQAAPDTEYGVP 299
+AP +SYG +D Q N Y LP + T Y P
Sbjct: 163 SAPFLSSYGSSNDPSQERVNEYSLPSNSNST-YTTP 197
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = -1
Query: 164 LRWSEPGRSIGRVSR-----SLWFHLLSLEPVVLPEAGRLSCHDN 45
L+W PGR IG SR S ++S P+ P R S N
Sbjct: 137 LKWESPGRDIGTSSRDSANVSRSSSMMSSHPIPTPAIQRTSSIPN 181
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 374 PEK*RRSGEFAGLLLRPPAWISAAAGTVP---DGERRQEHGVHRPSS 505
PE +R+ E+ LL P ++ VP DG R H RPSS
Sbjct: 561 PEVQQRACEYLQLLKMPRDFLQLVCDEVPPFLDGNRDGVHPKSRPSS 607
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +3
Query: 150 FRPAKPFNLPTRQEA---APPATSYGVPDDSYQAPANTYGLPQAAPDT-EYGV 296
F P P P+ + APPA SY P S+ A G DT +YG+
Sbjct: 318 FVPMYPTTFPSSKPQIVNAPPAPSYFSPGSSFGAQLCANGSTLLRADTKQYGL 370
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 142 LPGSDQRSRSTCPLVKKQLHRPHLTASPTTATKHQPTPTVYHKQLPT 282
+ S S+S + + H P LT T + + TP H LPT
Sbjct: 1 MSSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGLATPNTPHALLPT 47
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 171 NLPTRQEAAPPATSYGVPDDSYQAPANTYGLPQAAPDTEYGVPRDEETTTEN 326
NLP++ A P P S Q P N LP A+P++ +P + N
Sbjct: 338 NLPSQNAPARPVE----PSPSIQPP-NLLNLPTASPESTSWLPGSQTNIPAN 384
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +1
Query: 157 QRSRSTCPLVKKQLHRPHLTASPTTATKHQPTPTVYHKQLPTQNTVCLATKKLQPKTRKT 336
+RSR PL+K QL L P A+K + K L Q L L T K
Sbjct: 450 RRSRKDAPLLKSQLLMDSLENLPVRASKDRVRSLEVAKALQDQYQSLLT---LVESTAKR 506
Query: 337 SKLRV*TKNSRR 372
L+ N R+
Sbjct: 507 QLLKCQLSNLRK 518
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 177 PTRQEAAPPATSYGVP--DDSYQAPANTYGLPQAAPDTEYGVPRDEETTTEN 326
PT +AP A+ GVP ++S++A ++ +A P+ + T+E+
Sbjct: 293 PTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPEPVPASAAERAPTSES 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,331
Number of Sequences: 5004
Number of extensions: 40755
Number of successful extensions: 175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -