Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310D09f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 39 0.002
At4g01120.1 68417.m00150 G-box binding factor 2 (GBF2) identical... 31 0.62
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 29 1.4
At5g24310.1 68418.m02861 expressed protein strong similarity to ... 29 2.5
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS... 29 2.5
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 28 3.3
At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ... 28 4.4
At1g29370.1 68414.m03591 kinase-related similar to putative prot... 28 4.4
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 27 5.8
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 27 5.8
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 5.8
At2g13690.1 68415.m01510 PRLI-interacting factor, putative simil... 27 5.8
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 27 7.7
At5g13390.1 68418.m01542 expressed protein 27 7.7
At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4 fa... 27 7.7
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 27 7.7
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 27 7.7
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Frame = +3
Query: 165 PFNLPTRQEAAPPA------TSYGVPDDSYQAPANTYGLPQAA---PDTEYGVPRDEETT 317
P P PPA YGVP Y P YG+PQA P YG+P
Sbjct: 162 PLRQPQGGYGVPPAGYGVHQAGYGVPQAGYGIPQAGYGVPQAGYGIPQVGYGMPSGSSRR 221
Query: 318 TENAENLKVEGIN 356
+ A +VEG++
Sbjct: 222 LDEAMATEVEGLS 234
>At4g01120.1 68417.m00150 G-box binding factor 2 (GBF2) identical to
G-box binding factor 2 (GBF2) SP:P42775 from
[Arabidopsis thaliana];contains Pfam profile: PF00170
bZIP transcription factor
Length = 360
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +3
Query: 147 GFRPAKPFNLPTRQEAAPPATSYGVP----DDSYQAPANTYGLPQAAPDTEYGVPRDEET 314
G RP+ +LP R E P + G P S+Q A G+PQ + E + +++
Sbjct: 199 GERPSSQNSLPLRGENEKPDVTMGTPVMPTAMSFQNSAGMNGVPQPWNEKEVKREKRKQS 258
Query: 315 TTENAENLKVEGINEKLEEAPKSDAEVVSS 404
E+A ++ E + + K DA V +
Sbjct: 259 NRESARRSRLRKQAETEQLSVKVDALVAEN 288
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 210 SYGVPDDSYQAPANTYGLPQAAPDTEYGVP-----RDEETTTENAENLKVEGINEKLEEA 374
+Y V ++ APA T P+AA TE P D + TE A+ + + ++K EE
Sbjct: 130 AYYVDENPPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKTEEKKEGDKKEEEK 189
Query: 375 PKSDAE 392
PK +A+
Sbjct: 190 PKEEAK 195
>At5g24310.1 68418.m02861 expressed protein strong similarity to
unknown protein (emb|CAB66408.1)
Length = 321
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 145 PGSDQRSRSTCPLVKKQLHRPHLTASPTTATKHQPTPTVYHKQLPTQNTVCLATKKLQPK 324
P + +SR+ P K+ P +AS A + + H+Q P+++ L + K
Sbjct: 248 PTTPSKSRAVTPTPKRYPSEPRRSASVRVAFEKEAQKEPEHQQQPSKSKRLLKALLSRRK 307
Query: 325 TRKTSKL 345
T+K L
Sbjct: 308 TKKDDTL 314
>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 431
Score = 28.7 bits (61), Expect = 2.5
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Frame = +3
Query: 159 AKPFNLPTRQEAAPPATSYGVPDDSYQAPANTYGLP-QAAPDTEYGVPRDEETTTENAEN 335
+KP N + + TSY DS + N+ LP + D + G+ + T +
Sbjct: 30 SKP-NQNREETESTETTSY--EKDSVSSSENSDHLPKEIREDMDCGIIKGNGTESGRIIT 86
Query: 336 LKVEGINEKLEEAPKSDAEVVSSQGSYYVLLPGSQLQRVQFQTENDVRNMAYTARLQYKN 515
K +G+N++ ++ AE V GS+ V+ L +TE V +YKN
Sbjct: 87 TKKKGLNDQKDKTISYRAEHVIGTGSFGVVFQAKCL-----ETEEKVAIKKVLQDKRYKN 141
Query: 516 ED 521
+
Sbjct: 142 RE 143
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 171 NLPTRQEAAPPATSYGVPDDSYQAPANTYGLPQAAPDT 284
+LP Q APPAT V S PA G P P +
Sbjct: 620 SLPAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDTPSS 657
>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
(PYR4) identical to SP|O04904 Dihydroorotase,
mitochondrial precursor (EC 3.5.2.3) (DHOase)
{Arabidopsis thaliana}
Length = 377
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 118 LLLTRPMLLPGSDQRSRSTCPLVKKQLHRPHLTASPTTATK 240
LLL R L G Q P++K+++HR + + T+ +K
Sbjct: 233 LLLNRNALFQGGLQPHNYCLPVLKREIHREAIVKAVTSGSK 273
>At1g29370.1 68414.m03591 kinase-related similar to putative protein
kinase (GI:11125348) [Homo sapiens]; similar to Paired
box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
Length = 831
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 165 PFNLPTRQEAAPPATSYGVPDDSYQAPANTYGLPQAAPDTEYGVPRDEETTTENAEN 335
P NLP Q A PA++YG + + A + L Q + T + D+ +++ EN
Sbjct: 652 PGNLP--QSATAPASAYGFGNSTNVGSAGNFPLNQQSATTGTTLGYDDVLSSQYKEN 706
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +3
Query: 189 EAAPPATSYGVPDDSYQAPANTYGLPQAAPDT 284
EA PP TSY SY P YG AP T
Sbjct: 206 EAVPPPTSYSGGPPSYGGPRGGYG--SDAPST 235
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +3
Query: 189 EAAPPATSYGVPDDSYQAPANTYGLPQAAPDT 284
EA PP TSY SY P YG AP T
Sbjct: 206 EAVPPPTSYSGGPPSYGGPRGGYG--SDAPST 235
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 177 PTRQEAAPPATSYGVPDDSYQAPANTYGLPQAAPDTE 287
P P ++ YG P A + YG+P AAP T+
Sbjct: 296 PRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQ 332
>At2g13690.1 68415.m01510 PRLI-interacting factor, putative similar
to PRLI-interacting factor G [Arabidopsis thaliana]
GI:11139264 (PMID:9765207); supporting cDNA
gi|26450291|dbj|AK117606.1|
Length = 544
Score = 27.5 bits (58), Expect = 5.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +1
Query: 67 PASGRTTGSSDRRWNH---KLLLTRPMLLPGSDQRSRSTCPLVKKQLHRPHLTASPTTAT 237
PAS T S R NH K RP L+P S Q S+S +V + R L+ +
Sbjct: 33 PASPDTRSISSR--NHIPAKSQQQRPKLVPCSPQSSKSALNIVNRIDPRRILSPGRVSPI 90
Query: 238 KHQPTPTVYHKQLPTQ 285
PT T + TQ
Sbjct: 91 DSDPTVTTMQETETTQ 106
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 103 RWNHKLLLTRPM-LLPGSDQRSRSTCP 180
RWN +LL M LLP Q++ +TCP
Sbjct: 685 RWNIDVLLRMLMELLPAIHQKAMTTCP 711
>At5g13390.1 68418.m01542 expressed protein
Length = 1123
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 178 PLVKKQLHRPHLTASPTTATKHQPTPTVYHKQLPTQNTVCLAT 306
P ++ +L RPH+TAS + T+ + + + T+N + AT
Sbjct: 4 PELQPRLFRPHITASTSEPTQSSSSYSPHMSPASTRNFIDRAT 46
>At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4
family protein low similarity to SP|P25441 DNA-directed
RNA polymerase III 47 kDa polypeptide (EC 2.7.7.6) (C53)
(RNA polymerase C subunit 4) {Saccharomyces cerevisiae};
contains Pfam profile PF05132: RNA polymerase III RPC4
Length = 272
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = +3
Query: 276 PDTEYGVPRDEETTTENAENLKVEGINEKLEEAPKSDAEVVSSQGSYYVLLPGSQLQRVQ 455
P+ + V D + + +E L+ +NE+ PK+D +V +SQ ++ + S
Sbjct: 24 PEVKPEVVEDNSNSAQASELLR--RVNERSLRKPKADKKVPASQVAWLGGVVNSTRSNKY 81
Query: 456 FQTENDVRNMAYTARLQYK 512
N T ++YK
Sbjct: 82 LNRSNGAYGSTSTQEIEYK 100
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 177 PTRQEAAPPATSYGVPDDSYQAPANTYGLPQAAPDTEYGVPRDEETTTE----NAENLKV 344
P ++ P T V + +A A P+TE ++EE T +E+ K
Sbjct: 23 PVKEVEVPVTTEKAVAAPAPEATEEKVVSEVAVPETEVTAVKEEEVATGKEILQSESFKE 82
Query: 345 EG-INEKLEEAPKS 383
EG + +L+EA K+
Sbjct: 83 EGYLASELQEAEKN 96
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 294 VPRDEETTTENAENLKVEGINEKLEEAPKSDAE 392
V + E+ E +N+K N+KLEE PK D E
Sbjct: 89 VAKAEKRKVEYEKNIKA--YNKKLEEGPKEDEE 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,278,982
Number of Sequences: 28952
Number of extensions: 237666
Number of successful extensions: 976
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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