Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D05f
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   0.84 
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    24   5.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    24   5.9  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    23   7.9  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 149  QQNPFTKVLNKKSVCVRSDARLEFTGYXKXNETIREIVL-YYDHPIXYR 292
            +QN  +KV+   ++C +S +  +       N T+  I++  YD PI  R
Sbjct: 1065 EQNSLSKVMIPLNICQKSFSTAQGCNSIVINSTLSSIIVPCYDRPISSR 1113


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 95  LDDGR*LSHKLFKYYNFTQ 151
           +D+ + L + +F+Y+N+TQ
Sbjct: 522 MDENKFLINSVFRYFNYTQ 540


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 264 RTISRMVSXNFXYPVNSSRASERTHTLFLFNT--FVNGF 154
           R  +R+ + +  +  N S+ S+R   LFLFN   F +GF
Sbjct: 386 RPQARLFNESEAFKSNPSKFSKRGPRLFLFNNEEFEDGF 424


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 261 TISRMVSXNFXYPVNSSRASERTHTLFLFN 172
           T+S  +S +F Y V   R   R H  FL N
Sbjct: 76  TLSYFLSASFAYYVYFDREEARRHPKFLKN 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,043
Number of Sequences: 5004
Number of extensions: 18120
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)