Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D05f
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    29   0.56 
08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    27   2.3  
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961...    25   9.2  

>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 173 LNKKSVCVRSDARLEFTGYXKXNETIREIVLYYDHPI 283
           L K     R DA + F G     E++++ +LYYDH +
Sbjct: 85  LEKVFSSTRFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 173 LNKKSVCVRSDARLEFTGYXKXNETIREIVLYYDHPI 283
           L K     R DA + F G     E++++ +LYYD+ +
Sbjct: 115 LEKVFASTRFDAVVHFAGLKAVGESVQKPLLYYDNNV 151


>06_01_1186 -
           10195175-10195621,10195882-10195930,10196019-10196168,
           10196513-10196658,10196877-10196914,10197000-10197216,
           10197393-10197611,10197753-10197879,10198631-10198812,
           10198928-10199131,10199773-10199782,10200789-10200815,
           10201072-10201132,10201731-10201851
          Length = 665

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 59  KEK*LYFAAKISLDDGR*LSHKLFKYYNFTQQNPFTKVLNKKSVCVRSDARLEF 220
           +EK L F  +  + D R ++ +  +  +  +Q+P   V+     C+++ AR EF
Sbjct: 53  EEKNLIFGHQFKVQDFRRVNQQAAECLHGVEQSPGPSVMETIQPCLKAVARDEF 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,586,802
Number of Sequences: 37544
Number of extensions: 93900
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)