Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D05f
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.44 
SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  25   9.5  

>SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 271 VI*NYFSYGFVXFXISSKLQSCVG 200
           VI N+ SYG V    SSKLQ C+G
Sbjct: 178 VIPNHISYGLVLARNSSKLQKCLG 201


>SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 NFTQQNPFTKVLNKKSVCVRSDARLEFTGYXKXNETIREI 259
           ++T Q  ++  L    +C+R+ +R   T + K   T+REI
Sbjct: 133 HYTVQYLYSTALEHVDICLRNCSRNSRTPFAKFANTVREI 172


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 177 IKKVCVSAPTHDWSLLDXKN 236
           +KK C SA + +W+L   KN
Sbjct: 180 VKKTCNSASSREWTLQSVKN 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,527
Number of Sequences: 59808
Number of extensions: 123999
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)