Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D05f
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical ...    27   2.7  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    26   4.7  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    26   4.7  

>AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical
           protein Y65B4A.1 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 152 QNPFTKVLNKKSVCVRSDARLEFTGYXKXNETIREIVLYYDHP 280
           +N FT+ +  K+  +  D + E T   +    ++++V+Y +HP
Sbjct: 316 KNLFTQEMMNKNAALMLDLKEEMTQSCQKYGIVKKVVVYANHP 358


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 87  KFRWMMVGN*VINFLSITISRNKI 158
           +FR++ + N V N + IT+SRN +
Sbjct: 423 QFRYLCLSNSVPNHVKITVSRNNV 446


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 87  KFRWMMVGN*VINFLSITISRNKI 158
           +FR++ + N V N + IT+SRN +
Sbjct: 425 QFRYLCLSNSVPNHVKITVSRNNV 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,192
Number of Sequences: 27780
Number of extensions: 98094
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)