Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    30   0.18 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   1.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.0  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    26   3.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.0  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   9.0  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   9.0  

>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 469 SHLKGHASXISDT*KMNEIASLSGSYALLSNR-SSVKGCPLRTTKHFFSSLVIKLYL 302
           SH   + S  SD+ +  E  SL  S   +  R   +KG  L +T HF S L+I L+L
Sbjct: 153 SHYSQNQSSDSDSDEAPEEVSLKSSSDEVKKRLQRLKGNELHSTAHFVSLLLIVLFL 209


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 171 FGGRRKYIMVPFKPDV 218
           +GG+RKYI   F PD+
Sbjct: 945 YGGKRKYIFSSFNPDI 960


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 142  SMVQSQLNPHLNISNNKTTISRTEPYQNIVRVVLIAC 32
            S +   LN H  + N    IS+   +QN+V V   +C
Sbjct: 1125 SCIDHYLNAHKMLLNTTLDISKLPSFQNLVTVFCQSC 1161


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 232 LVPSITSGLNGTIIYLRRPPK*YLHQFLSASMVQSQLNPHLNISNNK 92
           LVPS T GLN    + + P   ++ +F + S ++       N+ + K
Sbjct: 15  LVPSSTIGLNSKTYHYKFPLLSFVREFSNGSYLRESAQNPANLGSQK 61


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 194 NIFTASPKVISPPVLKCFHGSISIKS 117
           N+F+++P     P+LKC    I I S
Sbjct: 609 NVFSSTPSQYRYPILKCIQTWIFISS 634


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 310 LYLLVW*CSPLMSVQKSMFCTDKTPCLVPSITS 212
           LY+L   CS L+  + S F   KTP L   +T+
Sbjct: 342 LYMLGTECSRLLGFKDSYFMFHKTPSLRKVLTT 374


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 408 DAISFIFYVSDIXEAWPFRWDVRSCASVGK 497
           D +   F V D   AW   W++ S A +GK
Sbjct: 43  DPLPSPFTVLDASRAWMVYWELSSLAILGK 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,547
Number of Sequences: 5004
Number of extensions: 49793
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)