Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0060 + 28108548-28109402                                         30   1.3  
11_08_0061 + 28117007-28117846                                         28   4.0  
04_01_0014 - 231228-233179,233522-233714                               28   5.2  
11_08_0059 + 28104958-28105827                                         27   6.9  
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    27   6.9  
10_02_0176 + 6215326-6215352,6216870-6217445                           27   6.9  
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    27   6.9  
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468...    27   9.1  

>11_08_0060 + 28108548-28109402
          Length = 284

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 153 NWWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHH 296
           N W  Y GGRR  +  PF   V+DG          IDF  D  G  H+
Sbjct: 124 NLWNAYLGGRRAGVPRPFGDAVVDG----------IDFFIDQGGADHY 161


>11_08_0061 + 28117007-28117846
          Length = 279

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +3

Query: 153 NWWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHH 296
           N W  Y GGRR  +  PF    +DG          IDF  D  G  H+
Sbjct: 118 NLWNAYLGGRRAGVPRPFGDAAVDG----------IDFFIDQGGADHY 155


>04_01_0014 - 231228-233179,233522-233714
          Length = 714

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 217 TSGLNGTIIYLRRPPK*YLHQFLSASMV 134
           T+G  G I+ LR PPK Y +   S +++
Sbjct: 105 TNGTKGVILMLRNPPKVYWYGLTSPTLI 132


>11_08_0059 + 28104958-28105827
          Length = 289

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 153 NWWRYYFGGRRKYIMVPFKPDVIDG 227
           N W  +  GRRK ++ PF    +DG
Sbjct: 120 NLWNAFLAGRRKGVLRPFGNAAVDG 144


>11_06_0211 +
           21305535-21305895,21306512-21306761,21307543-21307652,
           21308836-21309067,21310233-21310603,21311434-21311507,
           21311727-21311880,21312251-21312434,21313066-21313291,
           21313704-21314135,21314399-21314456,21314748-21314829,
           21315350-21315421,21316594-21316737,21317379-21317457,
           21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 148 SASMVQSQLNPHLNISNNKTTISRTEPYQNIVRVV 44
           +A  V SQLNPH+   NN +     EP ++I R +
Sbjct: 692 TAFSVDSQLNPHIFAENNMSFTE--EPLKHIARFI 724


>10_02_0176 + 6215326-6215352,6216870-6217445
          Length = 200

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  YSGMVLCAK*WFCYSIYLNADLIE 129
           Y G  L A+ WF Y  + N DL E
Sbjct: 122 YDGSALAARMWFAYDTFSNFDLPE 145


>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 325 SLVIKLYLLVW*CSPLMSVQKSMFCTDKTPCLVPS 221
           S +  + LL+  CSP  SV+KS   T+ TP  + S
Sbjct: 612 SFLTMILLLI--CSPAASVEKSELVTNSTPVTIDS 644


>09_06_0347 +
           22445962-22446154,22446495-22446616,22446764-22446885,
           22447405-22447594,22447874-22448014,22448257-22448724,
           22448842-22449609,22450185-22450373
          Length = 730

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 443 NIRHIEDE*NSVFIWIICPIEQQIKREGLSSTDN*TF 333
           + + + ++  +V  + ICPI+Q + R+ L + D  T+
Sbjct: 647 SFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTY 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,452,919
Number of Sequences: 37544
Number of extensions: 323573
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)