Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41551| Best HMM Match : Transglut_N (HMM E-Value=3.1e-25)           47   8e-06
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           34   0.082
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       31   0.44 
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_4155| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_41551| Best HMM Match : Transglut_N (HMM E-Value=3.1e-25)
          Length = 202

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 11/70 (15%)
 Frame = +3

Query: 243 LSVQNIDFCTDINGEHHHTSRYNL------MTRDEKK-----CLVVRRGQPFTLDLLLNR 389
           L  + +D+  +IN ++H+T++Y        +T +E K      L+VRRGQ F L +L +R
Sbjct: 4   LQPKEVDYHLEINHKNHNTTKYPKHPRNPELTENENKNDIGGLLIVRRGQTFDLTILFDR 63

Query: 390 AYDPDKDAIS 419
           AYDP+ D I+
Sbjct: 64  AYDPENDQIT 73


>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +3

Query: 195 MVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHHTSRYNLMTRDEKKCLVVRRGQPFTLD 374
           ++P KP +        L    +D+  + N + H+T+        E++ L+VRRGQ F L 
Sbjct: 6   VLPPKPILDTRLHNSQLKPVEVDYHEEANRKAHNTAF-------EQEGLIVRRGQEFELT 58

Query: 375 LLLNRAYDPDKDAIS 419
           +  +R Y+ D D ++
Sbjct: 59  IKFDRNYNADTDQLT 73


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 112  NADLIEI-EPWKHLRTGGDITLGDAVNILW 198
            N D I I  P ++L  GGD+ +GDA  + W
Sbjct: 1024 NHDFISILSPCRYLNIGGDVPIGDAFKLYW 1053


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
 Frame = -1

Query: 185 TASPKVISPPV--------LKCFHGSISIKSAFKYIE*QNHYFAHRT--IPEYCSCRANC 36
           TAS  V SPP         L      + IKS F+Y E  +H+F  R   I + CSC  N 
Sbjct: 527 TASEPVYSPPTSLAEFISRLVMMDSEVKIKSLFRYEE--SHHFGLRPDYIIDMCSCERNH 584

Query: 35  LCIRAVLV 12
           + ++   V
Sbjct: 585 ILVKTYWV 592


>SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 282 GEHHHTSRYNLMTRDEKKCLVVRRGQPFTLDLLLNRAYDPDKDAISFIFYVS 437
           G H  T+R + +T+D+   L       F LD+     +  D+D   F+F ++
Sbjct: 88  GGHFFTTRLSTLTKDQDSMLASMFSGRFNLDVDSEGRFFIDRDGTYFVFLLN 139


>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 218 HIWLKWHHNIFTASPKVISPPVLKCFHGS-ISIKSAFKYIE*QNHYFAHRTIP 63
           H  +  +   F   P  +  PV    +GS I++   ++Y+   N+ F H  +P
Sbjct: 40  HSTINLNREFFVRIPLKVMVPVTPALNGSQIAVNDYYRYLTQINYSFIHDLVP 92


>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2065

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 309 NLMTRDEKKCLVVRRGQPFTLDLLLNRAYDPDKDAISFIFYV 434
           +L TRD     VVR G    +D+ +  A D DK     IF+V
Sbjct: 197 HLFTRD----FVVREGGELVIDVTILNANDADKPMEELIFFV 234


>SB_4155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 52  RVVLIACVYVQSSCR 8
           R+V+++CV+V SSCR
Sbjct: 128 RIVVLSCVHVHSSCR 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,016,503
Number of Sequences: 59808
Number of extensions: 385901
Number of successful extensions: 853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)