Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70080.1 68414.m08063 terpene synthase/cyclase family protein...    28   3.3  
At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containi...    28   4.4  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    28   4.4  
At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase, put...    27   7.7  
At3g52210.1 68416.m05735 mRNA capping enzyme family protein cont...    27   7.7  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    27   7.7  
At1g79550.2 68414.m09274 phosphoglycerate kinase, putative simil...    27   7.7  
At1g79550.1 68414.m09273 phosphoglycerate kinase, putative simil...    27   7.7  

>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
           similar to (+)-delta-cadinene synthase [Gossypium
           hirsutum][GI:8389329], sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 611

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = -2

Query: 334 FFSSLVIKLYLLVW*CSPLM--SVQKSMFCTDKTPCLVPSITSGLNG---TIIYLRRPPK 170
           F S L  +L L      PL+  S+  S F + K  CLV + T+  +    T  +   PP 
Sbjct: 15  FLSRLCWRLNLSSSYHYPLLKSSLSFSRFQSPKKLCLVRATTNPTDDNSTTRSFTPHPPS 74

Query: 169 *YLHQFLSASMVQSQLN 119
            + H FLSAS+ Q++++
Sbjct: 75  LWGHHFLSASVNQTEMD 91


>At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 544

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 18  DCTYTQAISTTRTIFWYGSVREIVVLLFDIFKCGFN 125
           DC +T ++ T  T+  Y S  +I  L++ I++C  +
Sbjct: 192 DCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAID 227


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/23 (56%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +1

Query: 445 EKRGPS-DGTSAAVPLLERGSET 510
           +KRG S +GTS AVP++ER +E+
Sbjct: 386 KKRGDSGEGTSRAVPVVERATES 408


>At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase GI:2182104 from
           [Solanum tuberosum]
          Length = 471

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 335 FFLIPGHQIVSAGVVMFSIDVGAEINVLHR*DTLSRSVDHIWLKWHHNIFTA 180
           F +  GH  + A VV+  I +  E+  L R     R +   WL   H  FTA
Sbjct: 112 FIIYMGHLYIWAMVVVIQIFMAKELFFLRRRAHEERRLPGFWLLNWHFFFTA 163


>At3g52210.1 68416.m05735 mRNA capping enzyme family protein
           contains Pfam profile PF03291: mRNA capping enzyme,
           large subunit
          Length = 354

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 342 LNIFSHPWSSNCICWCG 292
           +NIF+HP+++ C  +CG
Sbjct: 25  INIFAHPYATVCELYCG 41


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
            PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 147  LKNWWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHH 296
            + NW   +  G +  ++ PF P V+       + V N +  T +NG  +H
Sbjct: 1019 IANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFDNH 1068


>At1g79550.2 68414.m09274 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 401

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 24  TYTQAISTTRTIFWYGSVREIVVLLFDIFKCG 119
           T+++A+ TT+TI W G +    V  FD F  G
Sbjct: 307 TFSEALDTTKTIIWNGPMG---VFEFDKFAAG 335


>At1g79550.1 68414.m09273 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 401

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 24  TYTQAISTTRTIFWYGSVREIVVLLFDIFKCG 119
           T+++A+ TT+TI W G +    V  FD F  G
Sbjct: 307 TFSEALDTTKTIIWNGPMG---VFEFDKFAAG 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,462
Number of Sequences: 28952
Number of extensions: 262269
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)