Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   1.3  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   3.0  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   6.8  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 71  WLCCLTI*MRLICWTI*RKVSKKTSKPKISQRMLTYLLCSDVNLRKPHTF 220
           W  C    M  ICW +  +V  K+    +S+ ML        N R  +TF
Sbjct: 608 WRDCGHCKMAEICWNLANRVYSKSGWESLSEHMLDLKPTLSENFRVKNTF 657


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 276 TPYVIVIFIAKFKVRIHNAK-VCGFRRLTSEHSRYVSILWLIFGFEVFFDTFLYI 115
           +P +I + I+   + + NA  VC  +   +    Y ++ W +FGF  F  T   I
Sbjct: 71  SPLLIKLLISFTSIILFNAPAVCYLKYKDAFFKNYGAVEWTLFGFWCFVCTLALI 125


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 289 DKPEFWFYYTTTMCPKHVYLLNLFVCHRQSGT 384
           +K E   Y+TT +C KH  L +L +     GT
Sbjct: 121 EKTEKIQYWTTLLCTKHSQLFDLVLTLGGDGT 152


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 365 VIDKAGLLPSEYQTQVKCRTINKAHTKR 448
           +IDK   LPSEY ++VK   +++  T+R
Sbjct: 159 IIDK---LPSEYDSRVKAMEVDEKPTER 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,794
Number of Sequences: 5004
Number of extensions: 42904
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)