Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0925 - 25992699-25992836,25992920-25993033,25993199-259933...    27   9.1  
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    27   9.1  
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379...    27   9.1  

>06_03_0925 -
           25992699-25992836,25992920-25993033,25993199-25993310,
           25993686-25993879,25994075-25994297,25994383-25994483,
           25995108-25995137,25995182-25995337
          Length = 355

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 338 MFTC*ICLCVIDKAGL----LPSEYQTQVKCRTINKAHTKRXLF 457
           +F C +C   + + G     LPS Y++  KC   NK+ T + +F
Sbjct: 76  VFACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKSFTSKDIF 119


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 139 LLRYFPLYRPTYETHLY 89
           L+ Y P+YR  Y THLY
Sbjct: 829 LMSYPPVYRQPYSTHLY 845


>02_01_0524 +
           3798019-3798265,3798419-3798651,3798765-3799014,
           3799104-3799249,3799372-3799577,3799721-3799845,
           3800154-3800734
          Length = 595

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 112 PTYETHLYRQTAKPSLVIYFLLIPNNQKLTNNPRAES 2
           P  E  LYR + +P ++ Y LLI +  K     +AES
Sbjct: 160 PVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAES 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,419
Number of Sequences: 37544
Number of extensions: 244906
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)