Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.1  
SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.1  
SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               28   5.4  
SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  27   9.4  
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  27   9.4  

>SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 372

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 387 KSPALSMTHKQIQQVNMFRTHSCGVVKPKFWLIFSVCT-PYVIVIFIAKFKVRIHNAKVC 211
           K P L  +++Q ++ N   + S  V+     L+F  C  PY  + F+  +K      K C
Sbjct: 238 KFPRLHQSNEQKRR-NRRVSRSATVIALTIVLVFQFCWGPYNTITFLWGYKWDWFKPKFC 296

Query: 210 GFRRL 196
           GF+ L
Sbjct: 297 GFKSL 301


>SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 372

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 387 KSPALSMTHKQIQQVNMFRTHSCGVVKPKFWLIFSVCT-PYVIVIFIAKFKVRIHNAKVC 211
           K P L  +++Q ++ N   + S  V+     L+F  C  PY  + F+  +K      K C
Sbjct: 238 KFPRLHQSNEQKRR-NRRVSRSATVIALTIVLVFQFCWGPYNTITFLWGYKWDWFKPKFC 296

Query: 210 GFRRL 196
           GF+ L
Sbjct: 297 GFKSL 301


>SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 269

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 YYTTTMCPKHVYLLNLFVCHRQSG 381
           YYT TMC KH Y     +C + +G
Sbjct: 129 YYTQTMCTKHAYYTQT-MCTKHAG 151


>SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 364 CHRQSGTFALGVPNSSEMSHNKQSPYXETTLQNNMSW 474
           CHR   +   G+ + SEM+ NK +      + +++SW
Sbjct: 196 CHRDITSAFWGICSGSEMAKNKHAQRIMDRILSDLSW 232


>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 364 CHRQSGTFALGVPNSSEMSHNKQSPYXETTLQNNMSW 474
           CHR   +   G+ + SEM+ NK +      + +++SW
Sbjct: 196 CHRDITSAFWGICSGSEMAKNKHAQRIMDRILSDLSW 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,924
Number of Sequences: 59808
Number of extensions: 317085
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)