Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    31   0.66 
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    29   2.7  
AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    28   3.5  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    27   6.2  
Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 281 TEKISQNFGFTTPQLCVLNMFTC*ICLCVIDKAGLLPSEY 400
           TE +  +FG  T  L V N+  C +CL  +    L PS +
Sbjct: 32  TESMKNSFGIITKNLAVCNIGMCGLCLFFLFPMQLAPSSF 71


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 195 TSEHSRYVSILWLIFGFEVFFDTFLYIVQHMRRIYIVKQQSHRLLFT 55
           T + S++  +    F F  +F+TF  IV  + R  ++  Q H +  T
Sbjct: 78  TEKKSKWTLVFGSAFLFFWYFETFTQIVMALNRYLVICLQKHHIFTT 124


>AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical
           protein R02D3.2 protein.
          Length = 743

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 94  LYRQTAKPSLVIYFLLIPNNQKLTNNPRAE 5
           +YR +   +LV+Y  + P N+ +  NP A+
Sbjct: 237 IYRTSMYDTLVLYLAVFPENEVVRKNPNAD 266


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 156 IFGFEVFFDTFLYIVQHMRRIYIVKQQSHRLLFTF 52
           IF F  +F+T L +V  + R  I+  Q H+ +FTF
Sbjct: 91  IFLFLWYFETILQVVMGLNRYVIICLQKHK-IFTF 124


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 148 LRSLLRYFPLYRPTYETHLYRQTAKPSLVIYFLLIP 41
           L ++ RYF + RPT  + L+ Q+ KP  V+     P
Sbjct: 119 LMTVQRYFIIGRPTDRSTLFMQSLKPWKVVLIYWFP 154


>Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical
           protein F59A1.3 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 300 FWLIFSVCTPYVIVIFIAKFKVRIHNAKVCGFRRLTSEHSRYVSILWLIFGF 145
           FW I   CT Y +++ +  F        VC           YV+IL LIF F
Sbjct: 88  FWYIALNCTCYSMIMLLLVFHFLYRYLAVCKPNMSKLFSFPYVTILILIFVF 139


>U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical
           protein R12C12.9a protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 330 THSCGVVKPKFWLIFSVCTPYVIVIFIAKF 241
           +H C V +   W++F V   YV+V+ IA F
Sbjct: 113 SHLCLVRRKLAWVMFLVIAVYVVVLGIAVF 142


>U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical
           protein R12C12.9b protein.
          Length = 245

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 330 THSCGVVKPKFWLIFSVCTPYVIVIFIAKF 241
           +H C V +   W++F V   YV+V+ IA F
Sbjct: 113 SHLCLVRRKLAWVMFLVIAVYVVVLGIAVF 142


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 244 LSNENNYDIGGAYRKDKPEFWFYYTTTMCPKHVYL 348
           L N+  Y +   +  D P F+F YT ++CP++  L
Sbjct: 114 LVNKTIYSL--EFYSDDPYFYFNYTVSICPENSIL 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,315
Number of Sequences: 27780
Number of extensions: 241333
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)