Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026...    29   2.3  
06_03_1336 - 29424470-29424897,29425243-29429653                       29   3.0  
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319...    28   4.0  
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    27   9.1  
02_05_1202 + 34932291-34933027,34933297-34933774                       27   9.1  

>01_02_0059 -
           10701859-10701963,10702034-10702153,10702534-10702609,
           10702897-10703276
          Length = 226

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 366 WSSGLIIGWYTSQLIHIKYKYHSNQYQKKCPTLSHIVNSLRPYFICSINNG 518
           W  G   GWY+   +       S Q Q++CP  +   N+L P +      G
Sbjct: 119 WGGGGRGGWYSGVAVPRGAAARSWQEQRRCPHKTSATNTLSPRYATRCGEG 169


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 379  NPLLHVMASIQVLCSKFHRLLFVPSFLHELKHL 281
            N  L  ++S+Q L   F RL F+PS LH L  L
Sbjct: 1381 NMALEHLSSLQELSFSFCRLQFLPSVLHRLVSL 1413


>05_01_0406 +
           3197189-3197389,3197491-3197628,3198463-3198544,
           3198658-3198734,3198829-3198935,3199367-3199505,
           3200602-3200718,3200850-3200941,3201096-3201162,
           3201249-3201355,3201468-3201546,3201751-3201894,
           3202095-3202235
          Length = 496

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -2

Query: 223 LLTTPTVLRFSNWATLLSKVSRIRRETYFHMITFKLIFTCILNQYVYTFIANLITSSRLH 44
           L+   T L F++  T  S  S     T FH +    I T ++++ +YT    L+T     
Sbjct: 336 LVHCKTSLTFAS--TTGSFTSNAIMATSFHCVNSLRISTSVISKPLYTVSYMLLTGGVSG 393

Query: 43  FLNLFIFYLL 14
           FL L ++Y++
Sbjct: 394 FLLLLLYYIV 403


>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 86  VHFHSEFNNIIAFAFLKLIYFL 21
           +H+HSE   ++ F  L L YF+
Sbjct: 524 MHYHSEIPRVLLFGLLGLTYFI 545


>02_05_1202 + 34932291-34933027,34933297-34933774
          Length = 404

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 405 ADLCTSQLLIHCSM*WHQSKFCAQNSIVCCLSRHSYTSSSIYKM 274
           AD+C    L+   + +H    C +  +V   S H+YT   IY+M
Sbjct: 288 ADVCLFTTLVRFDLVYHSLFRCTRRKLVEYASLHAYT-RDIYQM 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,500
Number of Sequences: 37544
Number of extensions: 240169
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)