Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310D01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0) 35 0.035
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_40092| Best HMM Match : Lipoprotein_3 (HMM E-Value=1.9) 28 5.4
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072) 27 7.1
SB_52566| Best HMM Match : Baculo_FP (HMM E-Value=1.7) 27 7.1
SB_48421| Best HMM Match : BofA (HMM E-Value=0.93) 27 7.1
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29) 27 9.4
SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 422
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 102 IHVNINLNVIMWKYVSRRIRDTFERSVAQFENRSTVGVVNXXXXXDEKSL 251
+ ++ +N +++ Y S+ IRD F+R + +N +T+GVV D S+
Sbjct: 370 VFLSCPVNPLVYAYSSKHIRDAFKRGLKCKKNTATIGVVTRRMSNDASSI 419
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -1
Query: 377 STAPCNGINPSSVLKIPSFAVCPVIPTRAQAFIR 276
S +PC+G+ PS +LK+ S AVC ++ T QA R
Sbjct: 620 SGSPCSGLVPSDLLKVLSKAVCALV-TSDQASSR 652
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 387 GWYTSQLIHIKYKYHSNQYQKKCPTLSHIVNSLRPYFICSINNG 518
G YT Q I H N Y + C T N ++ C++ NG
Sbjct: 651 GHYTCQKISGAKICHENWYGQACTTFCEARNDSTGHYSCNLTNG 694
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +3
Query: 339 HRTWIDAITWSSGLIIGWYTSQLIHIKYKYH 431
H W+ + W + + ++ S L H+ Y YH
Sbjct: 71 HERWLCHVIWQFHVSLLFHVSSLCHVNYVYH 101
>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 385 IINPLLHVMASIQVLCSKFHRLLFVPSFLH 296
++N HV+ ++ VLC+ F + L P +H
Sbjct: 304 MMNTPAHVLPAVSVLCASFLKSLLAPDAIH 333
>SB_40092| Best HMM Match : Lipoprotein_3 (HMM E-Value=1.9)
Length = 130
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 364 VMASIQVLCSKFHRLLFVPSFLHELKHL*DENQRDGVHRLFS 239
+++S+ + + L+F S +HE DE+Q+D VH+L S
Sbjct: 60 LLSSLSLPSNSVRTLVFNRSEMHEESKYLDEDQKDLVHKLKS 101
>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 408 IHIKYKYHSNQYQKKCPTLSHIVNS 482
+ IKY+Y SN Y C TL V+S
Sbjct: 258 LKIKYQYLSNNYMHLCGTLESAVSS 282
>SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)
Length = 677
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
Frame = -2
Query: 88 VYTF---IANLITSSRLHFLNLFI 26
VYTF I N+ ++++HFLNLFI
Sbjct: 199 VYTFGGVITNITFTAQVHFLNLFI 222
>SB_52566| Best HMM Match : Baculo_FP (HMM E-Value=1.7)
Length = 350
Score = 27.5 bits (58), Expect = 7.1
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Frame = +3
Query: 102 IHVNINLNVIMWKYVSRRIRDTFERSVAQFENRSTVGVVNXXXXXDEKSLCTPSRWFSSY 281
+HVN I+ K+ R +RD F ++S +SL +R +
Sbjct: 113 VHVNTPTASIIVKFARRDVRDRFYAGRKHLRDKSVRDTRTDNKIYISESLSPGNR--ELF 170
Query: 282 KCLSSCRNDGTNSKRWNFEHRTWIDAITWSSGLIIGWYTSQLIHIKYKY-HSNQ 440
K S R+D W + ++ S ++I + L+H+K + H +Q
Sbjct: 171 KAALSARHDLKFKYIWTQNRKVFLRKNNDSQAVLIS-KSQDLLHLKQREDHDSQ 223
>SB_48421| Best HMM Match : BofA (HMM E-Value=0.93)
Length = 362
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 277 LINA*ARVG--MTGQTANDGILSTELGLMPLHGAV 375
L NA R G +T + A +G+L TE G+M +H V
Sbjct: 165 LANACKRQGDKVTTKIAEEGLLETEAGVMKIHSHV 199
>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
Length = 1130
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 410 NQLTCVPANY*STAPCNGINPSSVLKI 330
+ LTC+P T P N +P++VL I
Sbjct: 338 SNLTCIPVGTSCTIPVNTCSPTNVLSI 364
>SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 357 AITWSSGLIIGWYTSQLIHIKYKYHSNQYQKKC 455
AI + L++ W TS L ++ H N+++ +C
Sbjct: 36 AIDHTRNLVVFWRTSHLPATEHDSHLNRFESRC 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,160,554
Number of Sequences: 59808
Number of extensions: 304975
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -