Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    29   0.32 
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    29   0.56 
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   0.97 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.3  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         26   3.9  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   3.9  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   9.0  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 154 HIVHIKKKNLRPQFIPTFLILNVYVREPCLSLYFFGWQQSIQQSYLKKKKT 2
           HI+ + K N RP  +    ++ +  + P   L F  W   ++  +L+K KT
Sbjct: 181 HIMKVGKNNFRPPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKT 231


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 504 THYRANWVPGPPSWEKLF-NWHT--NL*LVTTYDQF 406
           T Y A+ +  PP+W K+F N +T  N+  V+T+D F
Sbjct: 230 TKYNASQIVPPPNWAKMFPNGYTDDNIPDVSTWDAF 265


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 235 HLFIYLSN-FLFLFYLINIVFFFFRYNNINSKC 330
           H  +Y+S  FLFL Y+++IV +   YN  +  C
Sbjct: 31  HRLLYISIIFLFLNYVVDIVCYVKNYNGFSFFC 63


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 132 FFLIWTICKSERYRPLLALNTSVTL**AF*QCLSTSIYLPIQFFIFILFNKY 287
           FF+++ IC ++ Y  +L  +    +  A  + L  S+  P+ + I   FN Y
Sbjct: 478 FFILFNICYNKAYSSMLTTSCKKEILAAASRGLLNSVTSPVCYQILTYFNMY 529


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 202 LCNEHFNNVYQHLFIYLSNFLFLFYLINIVFFF 300
           L    F N + +L     +F FLF+L+N + FF
Sbjct: 63  LAKTEFKNSFSNL-----HFFFLFWLLNFILFF 90


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 352 TYFT*ILYLIINNIDVIVKLVIGCNKL*VGMPIKQFFPRGGARXPIRPI 498
           +YF    ++ IN  D  +K ++    +    P  QFF R  +  P+R I
Sbjct: 477 SYFDEEPFVYINPDDTSIKTIVDFYGIDPSFPRDQFFVRNQSGIPVRSI 525


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 VTSYKLVCQLNNFSHEGGPGTQ 487
           +T  +L+ Q+ N  HE GP T+
Sbjct: 245 LTMVQLLSQIENIQHESGPETE 266


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 259 FLFLFYLINIVFFF 300
           F++ FY++ I+FFF
Sbjct: 268 FMWFFYMLTIIFFF 281


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 LSTSIYLPIQFFIFILFNKYSFFLFPI 308
           L++ +   I  F FILF  + F LFPI
Sbjct: 217 LASRLEKSINVFFFILFAVHWFALFPI 243


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 498 YRANWVPGPPSWEKLFN 448
           YR  WV  P  W  LFN
Sbjct: 50  YRFQWVSKPTDWPILFN 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,976
Number of Sequences: 5004
Number of extensions: 35105
Number of successful extensions: 56
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)