Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              35   0.047
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   35   0.047
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  35   0.047
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.047
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           35   0.047
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       35   0.047
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.047
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          35   0.047
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     30   1.0  
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    30   1.3  
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)                    28   5.4  

>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 13  VNCNTTHYRANW 24


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 69  VNCNTTHYRANW 80


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 637 VNCNTTHYRANW 648


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 48  VNCNTTHYRANW 59


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 10  VNCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 50  VNCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519  VNCNTTHYRANW 484
            VNCNTTHYRANW
Sbjct: 1888 VNCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 48  VNCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 10  VNCNTTHYRANW 21


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 42  VNCNTTHYRANW 53


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 91  VNCNTTHYRANW 102


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 69  VNCNTTHYRANW 80


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 80  VNCNTTHYRANW 91


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 56  VNCNTTHYRANW 67


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 519 VNCNTTHYRANW 484
           VNCNTTHYRANW
Sbjct: 80  VNCNTTHYRANW 91


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 519 VNCNTTHYRAN 487
           VNCNTTHYRAN
Sbjct: 87  VNCNTTHYRAN 97


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 519 VNCNTTHYRAN 487
           VNCNTTHYRAN
Sbjct: 30  VNCNTTHYRAN 40


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 469 GGARXPIRPIVSRITIH 519
           GGA  PIRPIVSRITIH
Sbjct: 36  GGA--PIRPIVSRITIH 50


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 501 HYRANWVPG--PPSWEKLFNW 445
           H R+NWVP   P S ++LF W
Sbjct: 379 HLRSNWVPNEYPASMKRLFEW 399


>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
          Length = 131

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 469 GGARXPIRPIVSRITIH 519
           GGA  PIRPIVS ITIH
Sbjct: 38  GGA--PIRPIVSHITIH 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,419
Number of Sequences: 59808
Number of extensions: 233535
Number of successful extensions: 414
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)