Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   4.7  
Z75955-16|CAN86627.1|  483|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL110485-28|CAD36500.1|  145|Caenorhabditis elegans Hypothetical...    27   8.1  
AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    27   8.1  

>U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical
           protein F46G11.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 217 FN-NVYQHLFIYLSNFLFLFYLINIVFFFF 303
           FN + Y H  +   N +  FY +NI F FF
Sbjct: 581 FNPSTYSHTVVEFPNVIIQFYFLNIFFCFF 610


>Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical
           protein T03E6.2 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 229 YQHLFIYLSNFLFLFYLINIVFFFFRYNN 315
           +  + +YL+  LFL   + + FFFF ++N
Sbjct: 97  FSTISLYLNRQLFLTLSLQVFFFFFNFSN 125


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 NNVYQHLFIYLSNFLFLFYLINIV 291
           N+++ H   Y+  FLFL YLI I+
Sbjct: 536 NSIWAHQTYYMFGFLFLVYLILII 559


>Z75955-16|CAN86627.1|  483|Caenorhabditis elegans Hypothetical
           protein R07B7.9b protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 217 FNNVYQHLFIYLSNFLFLFYLINIVFFFFRYNNINS 324
           F   ++H+ +Y+   LF+F L+   F  FR N  NS
Sbjct: 60  FRPPFRHILVYILGLLFVFTLL---FVLFRGNEENS 92


>Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical
           protein R07B7.9a protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 217 FNNVYQHLFIYLSNFLFLFYLINIVFFFFRYNNINS 324
           F   ++H+ +Y+   LF+F L+   F  FR N  NS
Sbjct: 60  FRPPFRHILVYILGLLFVFTLL---FVLFRGNEENS 92


>Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical
           protein T27E7.4 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 229 YQHLFIYLSN-FLFLFYLINIVFFFFRYNNINSK 327
           Y  +F  +SN  +F    + ++++F+R  N+N+K
Sbjct: 222 YSRVFELVSNDSIFFLVPVTVLYYFYRTRNLNNK 255


>AL110485-28|CAD36500.1|  145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 217 FNNVYQHLFIYLSNFLFLF-YLINIVFFFFRYNNINSK 327
           F+  + H F +++   F F ++I  +F+F  Y NI+++
Sbjct: 90  FSPTFMHRFHWITQMTFFFGFVIFCLFYFLVYPNIHTQ 127


>AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 217 FNNVYQHLFIYLSNFLFLF-YLINIVFFFFRYNNINSK 327
           F+  + H F +++   F F ++I  +F+F  Y NI+++
Sbjct: 460 FSPTFMHRFHWITQMTFFFGFVIFCLFYFLVYPNIHTQ 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,666,205
Number of Sequences: 27780
Number of extensions: 198433
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)