Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   9.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 HNYFYSGHVPELANRKVDWLD 232
           H   +S ++P L ++K +WLD
Sbjct: 331 HGQIWSDNIPTLLDQKHNWLD 351


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 81  SRPHRS-PVVSCRFPLRINVLTDQRNSFTKDTTTSTAVTFPS*P-TGK*TGWTDATFAVN 254
           S P+ S PV S  + +  +         T + TTST+V + S P T      T+ T + +
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTS 560

Query: 255 TAWTSS 272
             +TS+
Sbjct: 561 VPYTST 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,400
Number of Sequences: 5004
Number of extensions: 39329
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)