Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0231 + 1744323-1745276,1745516-1746193                           31   0.56 
11_01_0234 + 1804581-1805357,1805941-1806447                           31   0.56 
06_03_0389 - 20273637-20274383,20274488-20274979                       30   1.3  
06_03_0387 - 20244279-20245025,20245130-20245621                       30   1.3  
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938...    28   4.0  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    27   6.9  
11_06_0757 + 26964983-26965048,26965470-26965874,26966921-269678...    27   9.1  
03_03_0185 + 15233133-15233469,15233950-15234057,15234146-152344...    27   9.1  

>12_01_0231 + 1744323-1745276,1745516-1746193
          Length = 543

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -1

Query: 209 WLARERDRCRSSCVLGKRIPLVC*HIYAQR----EATGNDRASVRSREPTTQLRKPP 51
           WL  E   CR   V G   P++C    + R     A   + A+   ++P  Q+ +PP
Sbjct: 470 WLMEEHHCCRQQAVAGDEEPVICRMYVSPRAPPDSAARQESAAFVQQQPAPQVSEPP 526


>11_01_0234 + 1804581-1805357,1805941-1806447
          Length = 427

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -1

Query: 209 WLARERDRCRSSCVLGKRIPLVC*HIYAQR----EATGNDRASVRSREPTTQLRKPP 51
           WL  E   CR   V G   P++C    + R     A   + A+   ++P  Q+ +PP
Sbjct: 354 WLMEEHHCCRQQAVAGDEEPVICRMYVSPRAPPDSAARQESAAFVQQQPAPQVSEPP 410


>06_03_0389 - 20273637-20274383,20274488-20274979
          Length = 412

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 213 GK*TGWTDATFAVNTAWTSSLWRPRKKTI 299
           GK  G TD+T AVN AWT++     K+TI
Sbjct: 52  GKGDGKTDSTKAVNEAWTAACAGTGKQTI 80


>06_03_0387 - 20244279-20245025,20245130-20245621
          Length = 412

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 213 GK*TGWTDATFAVNTAWTSSLWRPRKKTI 299
           GK  G TD+T AVN AWT++     K+TI
Sbjct: 52  GKGDGKTDSTKAVNEAWTAACAGTGKQTI 80


>07_03_0829 -
           21792924-21793247,21793332-21793482,21793577-21793811,
           21793900-21794110,21794218-21794435,21794536-21794671,
           21796732-21797517
          Length = 686

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 150 FGLLAHLCATGSDRKRPGFCAVARTDNAATKATTNHACILNDV 22
           F +L +L A     + PGFC+       +T    +  C +NDV
Sbjct: 636 FMMLGNLSAVVPQPRHPGFCSDRGGGGGSTDGEWSSTCTVNDV 678


>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -1

Query: 206  LARERDRCRSSCVLGKRIPLVC*HIYAQREATGNDRASVRSREPTTQLRK 57
            LARER+   SS V GK +     H   Q EA+     S R+    T  RK
Sbjct: 935  LAREREEQNSSVVYGKAMFTTISHGKVQDEASTRCNTSNRTPSRRTSRRK 984


>11_06_0757 +
           26964983-26965048,26965470-26965874,26966921-26967814,
           26972063-26972512,26973013-26973637,26994014-26994651,
           26994967-26995032
          Length = 1047

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 185 SGHVPELANRKVDWLDGR 238
           SG+   +A +KVDWL+GR
Sbjct: 574 SGNGRRIAEKKVDWLEGR 591


>03_03_0185 +
           15233133-15233469,15233950-15234057,15234146-15234420,
           15234504-15234758,15234853-15234971,15235525-15235620,
           15235705-15235810,15236039-15236179
          Length = 478

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 6/23 (26%)
 Frame = +2

Query: 161 YQGHNYF-----YSGH-VPELAN 211
           YQGH++F     Y+GH +PELAN
Sbjct: 198 YQGHDFFITGESYAGHYIPELAN 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,955
Number of Sequences: 37544
Number of extensions: 259628
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)