Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.14 
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              30   1.3  
SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             29   1.8  
SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_48103| Best HMM Match : Lectin_C (HMM E-Value=5.2e-36)              27   9.4  
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 158  FYQGHNYFYSGHVPELANRKVDWLDGRNICREYCMDLVSMETQEENNLIFKLIQ 319
            ++ G  Y++S      A+ K  W++ R+ CR+   DLVS+ T  EN  +F  I+
Sbjct: 1446 YWGGLCYYFSNATT--ADLKT-WMEARDFCRKSRGDLVSLRTANENAFVFSEIK 1496


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 224 WLDGRNICREYCMDLVSMETQEENNLIFKLIQ 319
           W + R  C+    DLVSMET+EE + I K IQ
Sbjct: 370 WTENREKCKSRNGDLVSMETEEEWSFINKKIQ 401


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 176 YFYSGHVPELANRKVDWLDGRNICREYCMDLVSMETQEENNLI 304
           Y+Y+G     ++ +  W  G+  C +   DL  +  +EEN  I
Sbjct: 99  YYYNGKCYHYSSFEETWTQGQRYCLDQDADLAIINDREENEFI 141


>SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 218 VDWLDGRNICREYCMDLVSMETQEENNLIFKL 313
           ++W D R  C +   DLV + +++EN  +++L
Sbjct: 24  MNWADARTACGKLGGDLVKITSEQENTFVYEL 55


>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 203 LANRKVDWLDGRNICREYCMDLVSMETQEENNLIFKLIQ 319
           L  +   W +GR  C+    DLVS+ET  E + +  L++
Sbjct: 864 LVTKGESWAEGRKTCQSKGGDLVSIETDGEWSYVKSLVE 902


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 212 RKVDWLDGRNICREYCMDLVSMETQEENNLIFKL 313
           R++ W D R  C +   DLV + ++EEN  ++ L
Sbjct: 133 REMAWNDARAACGDMGGDLVQIASKEENEFVYGL 166


>SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 224 WLDGRNICREYCMDLVSMETQEENNLIFKLIQQSES*AFDV*RLLNFKI 370
           W   +  C E+   LV+  T+EEN  ++K +   +S    +   LN KI
Sbjct: 85  WNLAKQACEEFNAHLVTFTTKEENQAVYKKLAVGKSLWIGLKSSLNSKI 133


>SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 140 NRPKEFFYQGHNYFYSGHVPELANRKVDWLDGRNICREYCMDLVSMETQEENNLIFKLIQ 319
           NR  + +++ H   Y      L + K+ W D   +CRE    L+++    E  +I K I+
Sbjct: 252 NRCPQGWFEAHKVCYG-----LYHEKMYWRDAMTLCREQGAGLLTVRDANEMEVIRKHIK 306

Query: 320 Q 322
           +
Sbjct: 307 E 307


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 134  IYAQREATGNDRASVRSREPTTQLRKPPPT 45
            I+  R A   +R+ VRSR     +R  PPT
Sbjct: 1552 IHTIRRANSKNRSMVRSRRSLADMRSTPPT 1581


>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 78   FSRPHRSPVVSCRFPLRINVLTDQRNSFTKDTTTSTAVTFP 200
            F++ HR  + +C F +++N LT    +F  +   S   T P
Sbjct: 1443 FNKDHREDLENCDFAMKVNKLTISLMAFFLENALSDVSTPP 1483


>SB_48103| Best HMM Match : Lectin_C (HMM E-Value=5.2e-36)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +2

Query: 158 FYQGHNYFYSGHVPELANRKVDWLDGRNICREYCMDLVSMETQEENNLIF 307
           +   ++Y+ +G   +L +R+  W D R  C++   +L+S+++  EN  ++
Sbjct: 11  YTSANDYWTTGD--DLVSRQT-WQDARAACQQAGAELISIQSAAENAFVY 57


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 125  QREATGNDRASVRSREPTTQLRKPPPTT 42
            QR   G+DR+  R+ +  +  +KPPP T
Sbjct: 1786 QRWLPGSDRSECRTSQGLSYTQKPPPPT 1813


>SB_22344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 324 LCWMSLKIRLFSSWVSIETRSMQ 256
           +CW+S   + F  WVS E  S++
Sbjct: 90  ICWLSFSAKAFMWWVSHERESLR 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,980
Number of Sequences: 59808
Number of extensions: 310255
Number of successful extensions: 834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)