Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310C03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 29 0.56
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 0.97
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 27 1.7
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 2.2
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 5.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 5.2
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 6.8
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 25 6.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 9.0
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 28.7 bits (61), Expect = 0.56
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 227 KLLIC-LATVSLDPFSSDGKYNFHML 153
++ +C LA+V+L F DGKYNF L
Sbjct: 440 EVAVCNLASVALPTFIKDGKYNFQKL 465
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 274 IDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHETLNCAVKL 441
+ Q S P +++QND+E +QE S E V L Y ++E + KL
Sbjct: 774 VSQPESPPQSYESIQNDNELLQELLSMGFPR-EKAVIALEATNYDVNEVSDSDSKL 828
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 184 EKGSNETVAKHINSFKLYINKNRNLFD-LEKIDQTHSVPLDVQNLQNDDE 330
EK + E + K +NSF ++ ++N+FD EK Q S L L N ++
Sbjct: 51 EKSAQEAIEK-VNSFYTHLKSSQNVFDYAEKSLQADSSNLLPTYLYNSED 99
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 298 LDVQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHETLNCAVKLKVRILNHQPVIP 477
+DVQ ++D ++WS F DL E L + L E + K KV I N ++
Sbjct: 502 VDVQTAWSNDPLEEKWSKFYVDLLEK----LEKFDEAL-EFASAISKGKVSIYNKNKILE 556
Query: 478 IA 483
++
Sbjct: 557 LS 558
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 163 KLYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
K + S EK +NE KH+ + I+K + E+ T V + N+ N
Sbjct: 379 KQFLGSLEKQNNEVKKKHLQLLEKQISKLMRYAETERPHDTKRVSVKWSNVLN 431
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 238 INKNRNLFDLEKIDQTHSVPLDVQNLQN--DDEFIQ-EWSSFTT 360
+ K LEK+++ V L ++NLQ+ DDE ++ E+S+F T
Sbjct: 346 LRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGT 389
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 145 DLNNIWKLYFPSDEKGSNETVAKHINSFKLYINKN 249
DL I + D G NE + + S K+Y KN
Sbjct: 55 DLQYILTTHHHYDHAGGNEDILSYFPSLKVYGGKN 89
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 143 VPTDITMGS*LAGALEDPAVLVTLAD 66
VPT+ T L+G+ DPA L LAD
Sbjct: 24 VPTEATASDILSGSEFDPAKLHPLAD 49
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 124 IVISVGTDLNNIWKLYFPSDEKGSNETVAKHINSFKLYINKNRNL 258
++ S T +NN W SD+ N+ +K + + + +N + +L
Sbjct: 456 VIGSSWTTVNNDWNSVSKSDQTFENDGASKVVPAGNITLNSDNSL 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,567
Number of Sequences: 5004
Number of extensions: 42440
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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