Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0589 - 15872006-15872126,15872389-15872438,15872767-158728...    30   1.3  
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    28   4.0  
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415...    28   4.0  
12_02_0534 - 20103908-20105897,20106314-20107116                       27   9.1  

>05_03_0589 -
           15872006-15872126,15872389-15872438,15872767-15872835,
           15873027-15873128,15873874-15873951,15874100-15874189,
           15874730-15874822
          Length = 200

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 266 KSNKFLFLFIYSLKLLICLATVSLDPFSSDGKYNFHMLLRSVPTD 132
           +  K LF   Y++ +      +S++P   +G++  H L++ VP D
Sbjct: 128 REEKLLFYHYYAVYITKLEGPLSIEPSRKEGEFCVHQLVKIVPQD 172


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 LFD-LEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLS 393
           LFD L K+DQ   +P+  +++Q D       SS      ENPV  L+
Sbjct: 467 LFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLN 513


>05_03_0394 -
           13440871-13441098,13441197-13441394,13441491-13441594,
           13441687-13442551,13442677-13443045,13443372-13443533,
           13443838-13444056,13444138-13444656,13444742-13444819,
           13446041-13446163
          Length = 954

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 414 MQAIF*CGQCCDWILKKVSSKGTPLLNKFIIILQV 310
           ++A+  C QC D+ L +VSS GT L ++ ++   V
Sbjct: 881 IEALDPCHQCLDYWLSRVSSVGTELPSESVMAAMV 915


>12_02_0534 - 20103908-20105897,20106314-20107116
          Length = 930

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 250 RNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLS 393
           RN    E+I     VP  +Q L   D F++ +  +   L  + +TTLS
Sbjct: 746 RNNISFEEIIDMQQVPSGLQRLFMPDSFMKAFPCWINSLMLSHLTTLS 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,841
Number of Sequences: 37544
Number of extensions: 230308
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)