Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   2.3  
SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          29   3.1  
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    28   4.1  
SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)          28   4.1  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 28   5.4  
SB_29482| Best HMM Match : 7tm_1 (HMM E-Value=6e-07)                   27   7.1  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 378 WILKKVSSKGTPLLNKFIIILQVLHIQWYAVSLIYFFQI 262
           W+ + VS + T + N  +I+L V  + W   ++  F  +
Sbjct: 227 WVRRSVSPEETKITNTLLIVLAVFLLSWSPFAITMFLDV 265


>SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 390 QCCDWILKKVSSKGTPLLNKFIIILQVLHIQWYAVSLIYFFQIEQVP 250
           +C  W+ KK+  KG  +   F+I++  +++   A+  I F  +E+ P
Sbjct: 125 KCLTWVKKKIKKKGA-IFPLFMILVNTIYL---AIGGIIFMSLERSP 167


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 229 KLYINKNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFE 372
           K+   KN + FD+E  + T  +P+   N    D  ++E S F +   +
Sbjct: 53  KICSGKNNHKFDIEGRNYTSRIPIQKDNFDYLDTLLEEQSLFDSSFHD 100


>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 262 DLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENP 378
           +LE  D + S   D  + ++DD+   E SS  TD  E+P
Sbjct: 575 ELETSDDSSSSESDTSDDESDDDHKSEKSSIATDTSEHP 613


>SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)
          Length = 1054

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 76  VTSTAGSSRAPANQLPIVI---SVGTDLNNIWKLYFPSDEKGSNETVA 210
           +T+   SS +P + L I+I     G+DL+N  +  FP   KG  E +A
Sbjct: 150 ITANLVSSISPESCLKIIIHNSKKGSDLHNELRSVFPIQLKGMKEAIA 197


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = +1

Query: 175 PSDEKGSNETVAKHI---NSFKLYINKNRNLFDLEKIDQTHSVP-LDVQNLQNDDEFIQE 342
           P+ + GS + V +      SF   I K R LFD    +   +VP L V+       F   
Sbjct: 506 PTFQDGSGDNVKRSPAKGRSFDQNIPK-RCLFDNSNFETGPNVPALHVEKPTLAVSFPPI 564

Query: 343 W-SSFTTDLFENPVTTLSTLE 402
           W S  ++ L++NP T+ STLE
Sbjct: 565 WLSKCSSGLYQNPQTSSSTLE 585


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 335 INSSSFCKFCTSNGTL*V*SIFSKSNKFLFLFIYSLKLLICLATVSLDPFSSD 177
           +++SS C+ C  NG +   S+ S     L   ++S  LL+ +  + +D  SS+
Sbjct: 377 VSNSSICQTCVDNGMVRNTSVPSSDPGLLVGLLFSTLLLLAVGLLWVDKQSSN 429


>SB_29482| Best HMM Match : 7tm_1 (HMM E-Value=6e-07)
          Length = 354

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = -3

Query: 342 LLNKFIIILQVLHIQWYAVS---LIYFFQIEQVPILVYI*LETINMLSHCFIGSF--FIG 178
           ++   ++   +LH   +  S   L Y +  +++  L++  L T + L H  + +   +IG
Sbjct: 121 IIQPSLVAENILHYSQHMPSCSNLAYHYYTDRILYLIFQTL-TFSSLHHLTLMNIDRYIG 179

Query: 177 RKVQFPYVVKIRSNRYYYGKLISW 106
            K  F Y V +   R   G +I+W
Sbjct: 180 MKNTFRYPVIVTQGRLVIGVVIAW 203


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 196 NETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDV----QNLQNDDEFIQEWSSFTT 360
           +E +A+ ++  +  + K  NL DLE++ +  +VP D+    + L++  + I +W    T
Sbjct: 335 HEDLAERVDGLEEEMPKKANLEDLEELRKRPAVPADIVDQLKRLKDAMDAINKWKEEKT 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,433,465
Number of Sequences: 59808
Number of extensions: 281859
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)