Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310C03f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035005-1|AAH35005.1| 770|Homo sapiens hypothetical protein FL... 31 1.9
BC034468-1|AAH34468.1| 770|Homo sapiens FLJ11171 protein protein. 31 1.9
AK002033-1|BAA92047.1| 770|Homo sapiens protein ( Homo sapiens ... 31 2.4
X97249-1|CAA65884.1| 756|Homo sapiens leucine-rich primary resp... 29 7.5
X52008-1|CAA36257.1| 452|Homo sapiens inhibitory glycine recept... 29 9.9
U77731-2|AAB38273.1| 360|Homo sapiens glycine receptor alpha 2B... 29 9.9
U77731-1|AAB38272.1| 360|Homo sapiens glycine receptor alpha 2 ... 29 9.9
CR450343-1|CAG29339.1| 452|Homo sapiens GLRA2 protein. 29 9.9
BC032864-1|AAH32864.1| 452|Homo sapiens glycine receptor, alpha... 29 9.9
AY437084-1|AAR87843.1| 452|Homo sapiens glycine receptor alpha2... 29 9.9
AY437083-1|AAR87842.1| 452|Homo sapiens glycine receptor alpha2... 29 9.9
AF053495-1|AAC35290.1| 452|Homo sapiens glycine receptor alpha ... 29 9.9
>BC035005-1|AAH35005.1| 770|Homo sapiens hypothetical protein
FLJ11171 protein.
Length = 770
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 133 SVGTDLNNIWKLYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTH 288
S G LNN W+L PS+ + T K +N+ +NL +K+D+ H
Sbjct: 35 SYGKPLNNEWQLPDPSEIFTCDHTELNAFLDLKNSLNEVKNLLSDKKLDEWH 86
>BC034468-1|AAH34468.1| 770|Homo sapiens FLJ11171 protein protein.
Length = 770
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 133 SVGTDLNNIWKLYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTH 288
S G LNN W+L PS+ + T K +N+ +NL +K+D+ H
Sbjct: 35 SYGKPLNNEWQLPDPSEIFTCDHTELNAFLDLKNSLNEVKNLLSDKKLDEWH 86
>AK002033-1|BAA92047.1| 770|Homo sapiens protein ( Homo sapiens
cDNA FLJ11171 fis, clone PLACE1007317, weakly similar to
Drosophila melanogaster Adrift mRNA. ).
Length = 770
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 133 SVGTDLNNIWKLYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTH 288
S G LNN W+L PS+ + T K +N+ +NL +K+D+ H
Sbjct: 35 SYGKPLNNEWQLPDPSEIFTCDHTEFNAFLDLKNSLNEVKNLLSDKKLDEWH 86
>X97249-1|CAA65884.1| 756|Homo sapiens leucine-rich primary
response protein protein.
Length = 756
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 256 LFD-LEKIDQTHSVPLDVQNLQNDDEFIQEWSSF-TTDLFENPVTTLSTLEYCLHETLNC 429
LFD L ++ T ++ LQ+ E +Q W + + D+ PVT S LE L ++NC
Sbjct: 474 LFDHLAQLFFTSTIYFKCSVLQSLKELLQNWLLWLSMDIHMKPVTN-SPLETTLGGSMNC 532
Query: 430 AVKL 441
KL
Sbjct: 533 VSKL 536
>X52008-1|CAA36257.1| 452|Homo sapiens inhibitory glycine receptor
protein.
Length = 452
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>U77731-2|AAB38273.1| 360|Homo sapiens glycine receptor alpha 2B
subunit protein.
Length = 360
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>U77731-1|AAB38272.1| 360|Homo sapiens glycine receptor alpha 2
subunit protein.
Length = 360
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>CR450343-1|CAG29339.1| 452|Homo sapiens GLRA2 protein.
Length = 452
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>BC032864-1|AAH32864.1| 452|Homo sapiens glycine receptor, alpha 2
protein.
Length = 452
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>AY437084-1|AAR87843.1| 452|Homo sapiens glycine receptor alpha2
subunit B protein.
Length = 452
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>AY437083-1|AAR87842.1| 452|Homo sapiens glycine receptor alpha2
subunit A protein.
Length = 452
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
>AF053495-1|AAC35290.1| 452|Homo sapiens glycine receptor alpha 2
subunit protein.
Length = 452
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 148 LNNIWK--LYFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQN 321
L++IWK L+F ++EKG+N N L I+KN + ++ T S P+D++N
Sbjct: 124 LDSIWKPDLFF-ANEKGANFHDVTTDNKL-LRISKNGKVLYSIRLTLTLSCPMDLKNFPM 181
Query: 322 D 324
D
Sbjct: 182 D 182
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,444,603
Number of Sequences: 237096
Number of extensions: 1359821
Number of successful extensions: 2640
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2640
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -