Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine re...    29   1.5  
U97008-19|AAB52318.2|  375|Caenorhabditis elegans Serpin protein...    29   2.7  
AY525082-1|AAS13530.1|  375|Caenorhabditis elegans serine or cys...    29   2.7  
Z30215-4|CAA82936.1|  541|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    28   4.7  
AL032623-4|CAA21510.1|  244|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL032623-3|CAA21509.1|  317|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf (tbp-asso...    27   6.2  
U43283-6|AAM15610.1|   83|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 247 NRNLFDLEKIDQTHSVPLD--VQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHET 420
           NR L  +  +D+  +  LD  V+      +++  WS  T D+ E   TTL  ++  +   
Sbjct: 235 NRELTRISIVDEFENTILDTLVKPEGRITDYVTRWSGITPDMMEGVTTTLGDVQKAIQSL 294

Query: 421 L 423
           L
Sbjct: 295 L 295


>AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein53 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 275 IFSKSNKFLFLFIYSLKLLICLATVSLDPFSSDGKYNFHMLL 150
           I+S  N  + L I+S     C  TV   PFS   ++NFHML+
Sbjct: 53  IYSVVNVLVPLDIHSYGYC-CFLTVRHGPFSEVSEFNFHMLV 93


>U97008-19|AAB52318.2|  375|Caenorhabditis elegans Serpin protein 6
           protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 184 EKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTT 360
           EKG+   VA HI S K +  K   L D++K+    +  L+ ++ +   E I  + S  T
Sbjct: 88  EKGTEVNVANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEASAEAINNFVSENT 146


>AY525082-1|AAS13530.1|  375|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 375

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 184 EKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTT 360
           EKG+   VA HI S K +  K   L D++K+    +  L+ ++ +   E I  + S  T
Sbjct: 88  EKGTEVNVANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEASAEAINNFVSENT 146


>Z30215-4|CAA82936.1|  541|Caenorhabditis elegans Hypothetical
           protein F40F12.4 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 244 KNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTL 390
           + ++ FD  + D +HS+PL +   ++ DEF  E S  T    ++   TL
Sbjct: 249 EEKSSFDYSQKDSSHSIPL-IPLAESKDEFEDESSHVTVKREDSSFETL 296


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 265 LEKIDQTH-SVPLDVQNL--QNDDEFIQEWSSFTTD 363
           L  +D+T  S P D Q+L  Q+D+EF   + + TTD
Sbjct: 693 LSSLDKTDISRPTDTQHLIKQHDEEFYNNYQTMTTD 728


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 265 LEKIDQTH-SVPLDVQNL--QNDDEFIQEWSSFTTD 363
           L  +D+T  S P D Q+L  Q+D+EF   + + TTD
Sbjct: 712 LSSLDKTDISRPTDTQHLIKQHDEEFYNNYQTMTTD 747


>AL032623-4|CAA21510.1|  244|Caenorhabditis elegans Hypothetical
           protein Y43F8B.2b protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 262 DLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHETL 423
           +LE I   H +   VQ++      + E    T DL    VTTL    YCL  TL
Sbjct: 84  ELEAIAAVHELSFAVQSIS-----VSEMLPRTPDLIFVNVTTLEAQPYCLELTL 132


>AL032623-3|CAA21509.1|  317|Caenorhabditis elegans Hypothetical
           protein Y43F8B.2a protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 262 DLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHETL 423
           +LE I   H +   VQ++      + E    T DL    VTTL    YCL  TL
Sbjct: 157 ELEAIAAVHELSFAVQSIS-----VSEMLPRTPDLIFVNVTTLEAQPYCLELTL 205


>AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 4
           protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 5   IVLKIKETLTPMIRASTTLQHPQGSL 82
           + ++++E L P   A+ T Q+P+GSL
Sbjct: 299 VEMEVEENLQPTAAATATRQYPEGSL 324


>U43283-6|AAM15610.1|   83|Caenorhabditis elegans Hypothetical
           protein T25G12.11 protein.
          Length = 83

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -3

Query: 222 INMLSHCFI--GSFFIGRKVQFPYVVK---IRSNRYYYGKLIS 109
           I M+  CF+   ++ IGR +  P V +   IRS RYY+ K I+
Sbjct: 9   IMMIITCFLIHSAYTIGRALIPPMVTRLRRIRSRRYYFNKDIA 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,235
Number of Sequences: 27780
Number of extensions: 228554
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)