Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310C03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26340.1 68417.m03787 F-box family protein contains F-box dom... 30 0.82
At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to GB... 30 1.1
At4g37920.1 68417.m05362 expressed protein 29 1.4
At5g27990.1 68418.m03371 expressed protein predicted proteins, S... 29 1.9
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ... 29 2.5
At5g55060.1 68418.m06862 expressed protein 28 4.4
At2g34620.1 68415.m04253 mitochondrial transcription termination... 28 4.4
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 27 5.8
At5g47780.1 68418.m05902 glycosyl transferase family 8 protein c... 27 5.8
At4g33620.1 68417.m04775 Ulp1 protease family protein low simila... 27 5.8
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 27 7.7
At3g03730.1 68416.m00378 F-box family protein contains F-box dom... 27 7.7
>At4g26340.1 68417.m03787 F-box family protein contains F-box domain
Pfam:PF00646
Length = 419
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 236 YSLKLLICLATVSLDPFSSDGKYNFHML--LRSVPTDIT 126
Y LK CL T P S+D +HML L SVPT T
Sbjct: 374 YVLKNAACLRTAKFSPESTDVGEKYHMLKELASVPTAST 412
>At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to
GB:CAA73304 from [Arabidopsis thaliana] (Gene 215 (1),
11-17 (1998)); contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); PMID: 12837945
Length = 323
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 250 RNLFD-LEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVT 384
++L D LEK +++HSV QN ND S +D +NP T
Sbjct: 134 KHLMDYLEKKEKSHSVSKSDQNPNNDSGSSSSSSQIASDFGQNPST 179
>At4g37920.1 68417.m05362 expressed protein
Length = 673
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +1
Query: 202 TVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFENPV 381
+V +H+ + YI+ FD ++D+ + + DDE + S+ +L ++
Sbjct: 92 SVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYE 151
Query: 382 TTLSTLEYCLHETLNCAVKLKVRILNHQP 468
T++ E +H LKVR+++ +P
Sbjct: 152 VTITINERNIH--------LKVRLISRRP 172
>At5g27990.1 68418.m03371 expressed protein predicted proteins,
Saccharomyces cerevisiae and Schizosaccharomyces pombe
Length = 184
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 193 SNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQEWSSFTTDLFE 372
+NETVA F +I + D+EK+ LD N +D + E ++ DL+E
Sbjct: 46 ANETVA---TVFDFFIQSKDPVKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYE 102
Query: 373 N 375
+
Sbjct: 103 D 103
>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 809
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +1
Query: 241 NKNRNLFDLEKIDQT------HSVPLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLE 402
N R +LE ++ T +++ + ++ DD F +W E V LS+ +
Sbjct: 500 NLERKRLNLEILENTFPDWCLNTINASLLSISTDDLFSSKWLEMDCPNVEALVLNLSSSD 559
Query: 403 YCLHETLNCAVKLKV-RILNH 462
Y L ++ KLKV I NH
Sbjct: 560 YALPSFISGMKKLKVLTITNH 580
>At5g55060.1 68418.m06862 expressed protein
Length = 645
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 389 NVVTGFSKRSVVKELHS*INSSSFCK 312
NV +GF R +V +L S N SSF K
Sbjct: 177 NVDSGFLSRKIVSDLESPTNRSSFAK 202
>At2g34620.1 68415.m04253 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 303
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 169 YFPSDEKGSNETVAKHINSFKLYINKNRNLFDLEKIDQTHSVPLDVQNLQNDDEFIQ 339
YF S+ KG E + + F + K LE +++ +PL + D+EF Q
Sbjct: 236 YFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQ 292
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 277 DQTHSVPLDVQ--NLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHETLNCAVKLKV- 447
D+ + P++ + ++ DD F +W E V +S+L+Y L + KLKV
Sbjct: 522 DECLNQPINARLLSIYTDDLFSSKWLEMDCPNVEALVLNISSLDYALPSFIAEMKKLKVL 581
Query: 448 RILNH 462
I NH
Sbjct: 582 TIANH 586
>At5g47780.1 68418.m05902 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8; strong similarity to unknown protein
(emb|CAB71043.1)
Length = 616
Score = 27.5 bits (58), Expect = 5.8
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Frame = +1
Query: 130 ISVGTDLNNIWKLYFPSDEKGSNETVAKHINSFKLYINKNRNL----FDLEKIDQTHSV- 294
I V DL+ +W + + G+ ET + + F Y+N + L FD + +
Sbjct: 444 IVVQKDLSGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYGMN 503
Query: 295 --PLDVQNLQNDDEFIQEWSSFTTD 363
LD QN E W D
Sbjct: 504 VFDLDEWKRQNITEVYHRWQDLNQD 528
>At4g33620.1 68417.m04775 Ulp1 protease family protein low
similarity to SP|Q9BQF6 SUMO-1-specific protease 2 (EC
3.4.22.-) (Sentrin-specific protease SENP7) {Homo
sapiens}; contains Pfam profile PF02902: Ulp1 protease
family, C-terminal catalytic domain
Length = 783
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 295 PLDVQNLQNDDEFIQEWSSFTTDLFENPVTTLSTLEYCLHETLNCAVK 438
P+DV + ++D+ ++E S F++PVT +E L C K
Sbjct: 14 PIDVFDYSDEDDRVEEESKKLLRKFDSPVTKKHHCAIDKYEFLRCFAK 61
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 331 FIQEWSSFTTDLFENPVTTLSTLEYCL 411
F+ + S F T L NP+ T+ ++ YC+
Sbjct: 688 FVADTSVFPTALGVNPMVTVQSIAYCI 714
>At3g03730.1 68416.m00378 F-box family protein contains F-box domain
Pfam:PF00646
Length = 393
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 151 NNIWKLYFPSDEKGSNETVAKHINSFKLYINKNRNLFD 264
NN WK++ PS +G V K + L +N ++FD
Sbjct: 208 NNSWKVFQPSKHQGCINMVFKEGKLYVLNPARNISVFD 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,293,879
Number of Sequences: 28952
Number of extensions: 207105
Number of successful extensions: 599
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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