Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.47 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.82 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   3.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 54  TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSE 233
           T L  DSRS++RM + SVN     +L    + W   H +     + L     +  +VF+ 
Sbjct: 272 TVLWLDSRSTERMIAASVNLICH-ILCMSDLHWQLPHNSTNPPNILLYYRDSLALSVFAL 330

Query: 234 TVTTSL 251
            +T  L
Sbjct: 331 ILTALL 336


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
 Frame = +2

Query: 23   ELKENGQAILNGASKGFPIIEKD--VFAFRQPSNR-IGVGSLYGLMVFCTSKLEVCYIEA 193
            E+  NG+ I+   +K +  +E++  +F   +  +R IG+ S     V      E   ++A
Sbjct: 1528 EVFVNGEKIVVSRNKAYQKVEENEIIFEIYKMGDRFIGLTS-DKFDVSLALDGERVMLKA 1586

Query: 194  NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 322
            +  Y   +RGL G+ +++  +DF  P   +      F  +Y L
Sbjct: 1587 SEDYRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYAL 1629


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   ERSYHRIERKWTGYSERSFQRIPD 78
           E+  ++ ERK+  Y ERS +R  D
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRD 69


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   ERSYHRIERKWTGYSERSFQRIPD 78
           E+  ++ ERK+  Y ERS +R  D
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRD 69


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 505 GVCAGDGVNTRLSERRHVHEQ*QGPERRYSPEDLFAGG 392
           G+ A D     LS R       +GP+   +P +  AGG
Sbjct: 37  GIWADDSDEEELSARPSFKTFDKGPKNYTTPVNFVAGG 74


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 364  SPAARCIPPPRL 399
            +P  RC PPPR+
Sbjct: 1696 APNRRCPPPPRM 1707



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 354  NTPITSCTMHPSPPPAN 404
            N P++     P PPP N
Sbjct: 1850 NIPVSGSPEPPPPPPRN 1866


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 168 NLRCATLKLTASTWVNFAVFSETVTTSLTMTSG 266
           N+R A   L +S + NF  F   V   L    G
Sbjct: 603 NVRFAVFALGSSAYPNFCAFGRYVDNLLGELGG 635


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,215
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)