Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    33   0.12 
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro...    32   0.27 
At1g09790.1 68414.m01098 phytochelatin synthetase-related contai...    30   0.82 
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   2.5  
At5g16560.1 68418.m01938 myb family transcription factor (KAN1) ...    29   2.5  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   2.5  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    29   2.5  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    28   4.4  
At4g37710.1 68417.m05338 VQ motif-containing protein contains PF...    28   4.4  
At4g29540.1 68417.m04213 bacterial transferase hexapeptide repea...    28   4.4  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    28   4.4  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    27   5.8  
At4g09450.1 68417.m01555 myb family transcription factor contain...    27   5.8  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    27   5.8  
At5g46820.1 68418.m05768 hypothetical protein contains similarit...    27   7.7  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    27   7.7  
At3g02125.1 68416.m00179 hypothetical protein                          27   7.7  
At2g07680.1 68415.m00992 ABC transporter family protein                27   7.7  
At1g22890.1 68414.m02859 expressed protein                             27   7.7  

>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +3

Query: 126 VLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASS 305
           ++A CT+S  S  +         T S   NF V+   +T + T+  G      AL   SS
Sbjct: 15  IIATCTISIVSGTV--------FTLSNRCNFTVWPGILTANRTLLRG---GGFALASGSS 63

Query: 306 VTRTVWPAAV--HRCKRPNTPITS 371
           V  TV P  V  HRCKR  T  TS
Sbjct: 64  VNLTVSPENVKMHRCKRSTTSHTS 87


>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
           protein
          Length = 192

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 356 HSHHQLHDASLPPACEQVFGGISPLRTLSLFMDMSPFRQACI 481
           H HH  HDAS+PP+   +    SP  + S     S    AC+
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASASASSAASSLPTACL 176


>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 454

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 251 YDDFRL-PNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQ 406
           Y  FR  P+ K C S S F   Y+    CP       S H + D  LPP  EQ
Sbjct: 221 YSQFRSSPSPKCCVSLSAF--YYQNIVPCPTCSCGCSSSHCVKDGELPPYLEQ 271


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 351 PNTPITSCTMHPSPPPANRSSGEY 422
           P+TP T+C   PSPP +   S  Y
Sbjct: 58  PSTPTTACPPPPSPPSSGGGSSYY 81


>At5g16560.1 68418.m01938 myb family transcription factor (KAN1)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI1 (KAN1) GI:15723590
          Length = 403

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 281 ICTSESEFGNAYRLARSCPQVQ-APEHSHH 367
           I  S S + NAYR  +S P+++  P H HH
Sbjct: 147 ILNSSSGYNNAYRSLQSSPRLKGVPLHHHH 176


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 245 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 352
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 84  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 245 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 352
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 22  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 327 AAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRSGP 437
           AA ++   P  P     ++P PPP  +++  Y+RS P
Sbjct: 187 AAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRSPP 223


>At4g37710.1 68417.m05338 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 123

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 208 QVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNSLS 38
           +VE V+F V   +   A +HETVQ     T   A    S    FD   S+G  S QN  +
Sbjct: 60  RVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNPAN 119

Query: 37  I 35
           I
Sbjct: 120 I 120


>At4g29540.1 68417.m04213 bacterial transferase hexapeptide
           repeat-containing protein similar to
           UDP-acetylglucosamine acyltransferase [Acinetobacter sp.
           M-1] GI:13358850; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 334

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 372 CTMHPSPPPANRSS-GEYRR-SGPCHCSWTCRLSDKRVF 482
           C++H S  P++++  G+     G CH +  C++ D+ +F
Sbjct: 152 CSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIF 190


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 345 KRPNTPITSCTMHPSPPPANRSS 413
           KR  +PIT    H SPPP  R++
Sbjct: 618 KRAKSPITKGKSHESPPPKKRNT 640


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 201 STWVNFAVF-SETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCT 377
           S  V+F+ F ++T+T   +   G   ++S ++  S +   +    ++  K+ NTP+  CT
Sbjct: 216 SCCVSFSSFYNDTITPCPSCACGCENKKSCVKADSKI---LTKKGLNTPKKDNTPLLQCT 272

Query: 378 MHPSP 392
            H  P
Sbjct: 273 HHMCP 277


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 20  IELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 160
           ++L E G++  NG   G P  E++   F +  N+ G G    +  +C
Sbjct: 74  VKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 339 RCKRPNTPITSCTMH-PSPPPANRSSGEYRRSG 434
           R KRP +P+  C    P PPP +  S    R G
Sbjct: 335 RIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRG 367


>At5g46820.1 68418.m05768 hypothetical protein contains similarity
           to carboxyl-terminal proteinase contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 474 ACLKGDMSMNNDRVLSGDIPPKTCSQ 397
           A L GD S N++ V   DIP + C Q
Sbjct: 47  AMLSGDTSANDEMVAEFDIPEEGCPQ 72


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 114 ATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETVT 242
           AT ++L HC +     +LN+RCA  + T     N  V   T+T
Sbjct: 201 ATGNLLYHCDIC--KFNLNMRCAIREPTPVALSNMKVHEHTLT 241


>At3g02125.1 68416.m00179 hypothetical protein
          Length = 355

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
 Frame = +3

Query: 60  LPKDSRSSKRMCSL-SVNQA-TESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSE 233
           LPK S S+     L   +QA   SV ++ + SWSS H N     L     T +  +VFS 
Sbjct: 43  LPKPSLSASEAQKLRESHQAYNSSVSSYTSSSWSSNHQN-HLIDLPGYDPTRIPSSVFSS 101

Query: 234 TVTTSLTMTSGYLMERSALRKAS-SVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPANRS 410
               S   +        ++   + S++  +  A + R +     IT     P PPP  + 
Sbjct: 102 KPGNSTEWSLASNESLFSIHDGNFSISTALRLAEIPRFEETVHVITEINSVPLPPPVKKP 161

Query: 411 SGEYRR 428
           + EY +
Sbjct: 162 N-EYEK 166


>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 87  FSMIGNPLEAPFRIACPFSFNSMIAPLLS 1
           F+++G+ L+A     C   FNS+I+PL S
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNS 304


>At1g22890.1 68414.m02859 expressed protein 
          Length = 73

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 372 CTMHPSPPPANRS 410
           C  HPSPPP +RS
Sbjct: 43  CVSHPSPPPPHRS 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,391
Number of Sequences: 28952
Number of extensions: 272364
Number of successful extensions: 1060
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)