Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C01f
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...   133   2e-32
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    63   2e-11
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    46   4e-06
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    41   1e-04
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    35   0.008
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    29   0.30 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   0.30 
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   4.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.4  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   8.4  

>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  133 bits (321), Expect = 2e-32
 Identities = 60/99 (60%), Positives = 74/99 (74%)
 Frame = -1

Query: 457 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 278
           MLPL+LL   Q  P+LVELKNGET+NGHL +CDN+MN+ LREVI T  DGDKF+R+PECY
Sbjct: 1   MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 60

Query: 277 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 161
           IRG+ IKYLRI DEV+  V ++   +   R    +GRGQ
Sbjct: 61  IRGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQ 99


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 29/72 (40%), Positives = 46/72 (63%)
 Frame = -1

Query: 454 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 275
           L + LL   Q H + +EL+NG TY G L+  ++ MN  +R++  T+RDG +   + + YI
Sbjct: 3   LCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDG-RVSHLDQVYI 61

Query: 274 RGSTIKYLRIPD 239
           RGS I++L +PD
Sbjct: 62  RGSHIRFLIVPD 73


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
 Frame = -1

Query: 424 NHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRI 245
           N  + +ELKNG   +G + S D  MN +L+ V  T + G +   +    IRG+ I+Y  +
Sbjct: 12  NETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVK-GREPVPVETLSIRGNNIRYYIL 70

Query: 244 PDEV-ID--MVKEETQVKARGRNEVSKGRGQ 161
           PD + +D  ++ + T+ K + + EV +GRG+
Sbjct: 71  PDSLPLDTLLIDDSTKPKQK-KKEVVRGRGR 100


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -1

Query: 457 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMP--- 287
           ML  S  +T  +  + VELKN  +  G L S D ++N+ L  +     D  K+  M    
Sbjct: 1   MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVV--DASKYPHMAAVK 58

Query: 286 ECYIRGSTIKYLRIPDEVIDMV 221
           + +IRGS ++Y+ +    +D +
Sbjct: 59  DLFIRGSVVRYVHMSSAYVDTI 80


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -1

Query: 466 YIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMN---INLREVICTSRDGD 305
           ++ + P   L+     P+LV LK G+ Y G L S D++MN   +N  E++   + GD
Sbjct: 3   FVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGD 59


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -1

Query: 451 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 272
           P   L       +L+ L +G  Y G L   D +MN+ L E      +G K     + +IR
Sbjct: 5   PNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIR 63

Query: 271 GSTIKYLRIPDE 236
           G+ + Y+   D+
Sbjct: 64  GNNVLYVSALDD 75


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 424 NHPMLVELKNGETYNGHLVSCDNWMNINLRE 332
           NH + V  K+G T+ G L++ D +MN+ L +
Sbjct: 11  NHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD 41


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -1

Query: 415 MLVELKNGETYNGHLVSCDN-WMNINLREVICTSRD-GDKFWRMP--ECYIRGST 263
           MLV L  G  + G  V  +  W N+        S D GD FWRMP  E Y++  T
Sbjct: 395 MLVAL--GNVFTGAFVQGEELWKNLET-----ASHDAGDLFWRMPFHEAYLKQLT 442


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 94  VEVLCRGYRMRLGYHH 141
           V+VL R YR  LG HH
Sbjct: 492 VKVLIRAYRENLGLHH 507


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 159 FCPRPLETSLRPRALTCVSSF-----TMSMTSSGILKYL 260
           FCP  L+ +  P+ L C+  F      M +  SGIL+ L
Sbjct: 525 FCPLQLDFNNWPKFLCCLQGFVSPDIAMRLFQSGILRKL 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,843
Number of Sequences: 5004
Number of extensions: 29598
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)