Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C01f
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   1e-10
SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)                   49   2e-06
SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)                    34   0.057
SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    30   1.2  
SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)                  30   1.2  
SB_17341| Best HMM Match : RVT_1 (HMM E-Value=0.063)                   30   1.2  
SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)                       28   5.0  
SB_17170| Best HMM Match : RVT_1 (HMM E-Value=0.0023)                  28   5.0  
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 27   8.7  
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 27   8.7  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
 Frame = -1

Query: 454 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 275
           +P+ +L  A+ H + +E  NGE Y G L+  ++ MN  +  +  T+RDG +  ++ + ++
Sbjct: 5   VPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDG-RVSQLEQVFV 63

Query: 274 RGSTIKYLRIPDEV--IDMVKEETQVKARGRNEVSKGR 167
           RGS I++L +PD +    M K+ TQ  + G     +G+
Sbjct: 64  RGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGK 101


>SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)
          Length = 114

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
 Frame = -1

Query: 442 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 263
           L++  Q +   VEL+N     G +   D +MNI +++V      G+    +P  ++ G+ 
Sbjct: 16  LIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGE-VDNLPAMFVVGTQ 74

Query: 262 IKYLRIPDEVIDMVK--EETQVKARGRNEVSKGR 167
           I+Y+ IPDE IDM K  E+   K +G   V + R
Sbjct: 75  IRYVHIPDE-IDMRKAIEQELGKIQGTRTVKRER 107


>SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)
          Length = 43

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 451 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNI 344
           P   L +    P++++LK G  Y G+LVS D +MN+
Sbjct: 7   PKPFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNL 42


>SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 764

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-----VSSFTMSMTSSGILKYL 260
           P+ +ET +RP +LTC     +  FT+S +  GI+++L
Sbjct: 393 PKSIETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHL 429


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-----VSSFTMSMTSSGILKYL 260
           P+ +ET +RP +LTC     +  FT+S +  GI+++L
Sbjct: 504 PKSIETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHL 540


>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-----VSSFTMSMTSSGILKYL 260
           P+ +ET +RP +LTC     +  FT+S +  GI+++L
Sbjct: 509 PKSIETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHL 545


>SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)
          Length = 554

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-----VSSFTMSMTSSGILKYL 260
           P+ +ET +RP +LTC     +  FT+S +  GI+++L
Sbjct: 129 PKSIETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHL 165


>SB_17341| Best HMM Match : RVT_1 (HMM E-Value=0.063)
          Length = 376

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-----VSSFTMSMTSSGILKYL 260
           P+ +ET +RP +LTC     +  FT+S +  GI+++L
Sbjct: 129 PKSIETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHL 165


>SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)
          Length = 370

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 110 AVTECASATTTATGPH 157
           A +ECASATT+ TG H
Sbjct: 124 AASECASATTSITGSH 139


>SB_17170| Best HMM Match : RVT_1 (HMM E-Value=0.0023)
          Length = 391

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 104 STSTSAWRREPATTEQK 54
           STSTSAW R P++T +K
Sbjct: 44  STSTSAWARSPSSTVRK 60


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-VSSFTMSMTSSGILKYLI 263
           PR +++ LRP +LTC +S    S T S +L  L+
Sbjct: 530 PRTIDSDLRPISLTCQISKVLESFTLSRMLPKLL 563


>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-VSSFTMSMTSSGILKYLI 263
           PR +++ LRP +LTC +S    S T S +L  L+
Sbjct: 616 PRTIDSDLRPISLTCQISKVLESFTLSRMLPKLL 649


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 165 PRPLETSLRPRALTC-VSSFTMSMTSSGILKYLI 263
           PR +++ LRP +LTC +S    S T S +L  L+
Sbjct: 616 PRTIDSDLRPISLTCQISKVLESFTLSRMLPKLL 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,914
Number of Sequences: 59808
Number of extensions: 238927
Number of successful extensions: 643
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)