SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310C01f
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati...   171   2e-43
At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati...    66   2e-11
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put...    65   3e-11
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta...    47   6e-06
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put...    39   0.002
At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1, put...    37   0.007
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta...    37   0.009
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta...    35   0.027
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    34   0.047
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f...    34   0.047
At4g03960.1 68417.m00559 tyrosine specific protein phosphatase f...    30   0.76 
At2g32960.1 68415.m04040 tyrosine specific protein phosphatase f...    29   1.3  
At3g02800.1 68416.m00272 tyrosine specific protein phosphatase f...    29   1.8  
At5g16480.1 68418.m01926 tyrosine specific protein phosphatase f...    29   2.3  
At5g44980.1 68418.m05516 F-box family protein contains F-box dom...    27   5.4  
At3g15430.2 68416.m01958 regulator of chromosome condensation (R...    27   7.1  
At3g15430.1 68416.m01957 regulator of chromosome condensation (R...    27   7.1  
At1g08750.3 68414.m00974 GPI-anchor transamidase, putative simil...    27   9.4  
At1g08750.2 68414.m00973 GPI-anchor transamidase, putative simil...    27   9.4  
At1g08750.1 68414.m00972 GPI-anchor transamidase, putative simil...    27   9.4  

>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
           LSm4 [Mus musculus]
          Length = 129

 Score =  171 bits (416), Expect = 2e-43
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = -1

Query: 457 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 278
           MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 277 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQNM 155
           IRG+TIKYLR+PDEVID V+EE     R    V +GRG+ +
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGV 101


>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           small nuclear ribonucleoprotein Sm D3 (snRNP core
           protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
          Length = 131

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
 Frame = -1

Query: 454 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 278
           +P+ LL  A  H + VELK+GE Y G ++ C DNW N  L ++  T++DG K  ++   +
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITYTAKDG-KVSQLEHVF 64

Query: 277 IRGSTIKYLRIPD--EVIDMVKE-ETQVKARGRN-EVSKGRG 164
           IRGS ++++ IPD  +   M K  + ++K +  +  V +GRG
Sbjct: 65  IRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG 106


>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
           putative / snRNP core protein D3, putative / Sm protein
           D3, putative similar to SWISS-PROT:P43331 small nuclear
           ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
           [Mouse]
          Length = 128

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
 Frame = -1

Query: 454 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 278
           +P+ LL  +  H + VE+K+GE Y G ++ C DNW N  L  +  T++DG K  ++   +
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64

Query: 277 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNE---VSKGRGQNM 155
           IRGS +++L IPD ++        V+ +G++    V +GRG  M
Sbjct: 65  IRGSLVRFLVIPD-MLKNAPMFKDVRGKGKSASLGVGRGRGAAM 107


>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
           putative / snRNP core SM-like protein, putative / U6
           snRNA-associated Sm-like protein, putative similar to
           SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
           LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
           SnRNP core SM-like protein SM-x5) [Homo sapiens]
          Length = 93

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
 Frame = -1

Query: 457 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 287
           ML  S  +      + VELKN     G L S D ++NI L        D DK+  M    
Sbjct: 1   MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58

Query: 286 ECYIRGSTIKYLRIP-DEV-IDMVKEETQVKARG 191
            C+IRGS ++Y+++P D V +D++ +  + +ARG
Sbjct: 59  NCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 92


>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
           putative / snRNP core protein D1, putative / Sm protein
           D1, putative similar to small nuclear ribonucleoprotein
           Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
           [Mouse] SWISS-PROT:P13641
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
 Frame = -1

Query: 439 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 260
           L    N  + +ELKNG   +G +   D  MN +L+ V  T + G     +    +RG+ I
Sbjct: 7   LMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 65

Query: 259 KYLRIPDEV---IDMVKEETQVKAR----GRNEVSKGRGQ 161
           +Y  +PD +     +V++  ++K +    G+    +GRG+
Sbjct: 66  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGR 105


>At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1,
           putative / snRNP core protein D1, putative / Sm protein
           D1, putative similar to SWISS-PROT:SP|P13641 small
           nuclear ribonucleoprotein Sm D1 (snRNP core protein D1,
           Sm-D1, Sm-D autoantigen)[Mouse]
          Length = 114

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
 Frame = -1

Query: 439 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 260
           L    N  + +ELKNG   +G +   D  MN +L+  +  S  G     +    +RG+ I
Sbjct: 7   LMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLK-TVKMSLKGKNPVTLDHLSLRGNNI 65

Query: 259 KYLRIPDEV---IDMVKEETQVKAR---GRNEVSKGRGQ 161
           +Y  +PD +     +V++  +VK +       V +GRG+
Sbjct: 66  RYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR 104


>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = -1

Query: 451 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 272
           P   L++ +  P++V+L +G  Y G L   D +MNI + +      +G    +  + +IR
Sbjct: 15  PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73

Query: 271 GSTIKYL 251
           G+ + Y+
Sbjct: 74  GNNVLYI 80


>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
           putative / snRNP-F, putative / Sm protein F, putative
           similar to SWISS-PROT:Q15356 small nuclear
           ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
           [Mouse]
          Length = 88

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 463 IKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE 284
           I + P   L       ++V+LK G  Y G L S D++MN+ L        DG     + E
Sbjct: 4   IPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE-EYIDGQLTGNLGE 62

Query: 283 CYIRGSTIKYLR-IPDE 236
             IR + + Y+R +P++
Sbjct: 63  ILIRCNNVLYVRGVPED 79


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 34.3 bits (75), Expect = 0.047
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -1

Query: 451 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 272
           P   L++ +  P++V+L +G  Y G L   D +MNI + +      +G       + ++R
Sbjct: 15  PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTE-EYVNGQLKNTYGDAFVR 73

Query: 271 GSTIKYL 251
           G+ + Y+
Sbjct: 74  GNNVLYI 80


>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
           family protein contains tyrosine specific protein
           phosphatases active site, PROSITE:PS00383
          Length = 215

 Score = 34.3 bits (75), Expect = 0.047
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = -1

Query: 481 NEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDK 302
           N  DH I+M  L +L   +NHP+L+  K G+   G LV C     +   +  C +   D+
Sbjct: 125 NIPDHKIRMA-LKVLLDEKNHPVLIHCKRGKHRTGCLVGC-----LRKLQKWCLTSIFDE 178

Query: 301 FWRMPECYIRGSTIKYLRIPD 239
           + R      R S  +++ I D
Sbjct: 179 YQRFAAAKARVSDQRFMEIFD 199


>At4g03960.1 68417.m00559 tyrosine specific protein phosphatase
           family protein contains tyrosine specific protein
           phosphatases active site, PROSITE:PS00383
          Length = 198

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 448 LSLLRTAQNHPMLVELKNGETYNGHLVSC 362
           L +L   +NHP+L+  K+G+   G LV C
Sbjct: 111 LQVLLDTENHPVLIHCKSGKHRTGCLVGC 139


>At2g32960.1 68415.m04040 tyrosine specific protein phosphatase
           family protein contains Pfam profile PF03162: Putative
           tyrosine phosphatase family
          Length = 257

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 448 LSLLRTAQNHPMLVELKNGETYNGHLVSC 362
           L +L   +NHP+L+  K G+   G LV C
Sbjct: 177 LKVLLDEKNHPLLIHCKRGKHRTGCLVGC 205


>At3g02800.1 68416.m00272 tyrosine specific protein phosphatase
           family protein contains tyrosine specific protein
           phosphatases active site, PROSITE:PS00383
          Length = 199

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 448 LSLLRTAQNHPMLVELKNGETYNGHLVSC 362
           L +L   +NHP+L+  K G+   G LV C
Sbjct: 93  LKVLVDVRNHPILIHCKRGKHRTGCLVGC 121


>At5g16480.1 68418.m01926 tyrosine specific protein phosphatase
           family protein contains tyrosine specific protein
           phosphatases active site, PROSITE:PS00383
          Length = 204

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 448 LSLLRTAQNHPMLVELKNGETYNGHLVSC 362
           L +L   +NHP+L+  K G+   G LV C
Sbjct: 96  LRVLVDVRNHPILIHCKRGKHRTGCLVGC 124


>At5g44980.1 68418.m05516 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 373 LVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPD 239
           L SC N  N+ L   +   R+   F  +P+C I  ST++Y+ I +
Sbjct: 336 LESCPNLKNLILEYNVELDREQVDFTNVPQCLI--STLEYVEIKE 378


>At3g15430.2 68416.m01958 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 488

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 LRPRALTCVSSFTMSMTSSGILKYLIVLPR 275
           LRPR L C+    +S  S+G+   ++V  R
Sbjct: 419 LRPRVLECLKPHRVSQVSTGLYHTIVVTQR 448


>At3g15430.1 68416.m01957 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 488

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 LRPRALTCVSSFTMSMTSSGILKYLIVLPR 275
           LRPR L C+    +S  S+G+   ++V  R
Sbjct: 419 LRPRVLECLKPHRVSQVSTGLYHTIVVTQR 448


>At1g08750.3 68414.m00974 GPI-anchor transamidase, putative similar
           to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
           transamidase) {Saccharomyces cerevisiae}; contains Pfam
           profile PF01650: Peptidase C13 family
          Length = 388

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 343 NLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE-VIDMVKEETQVKAR 194
           N   ++CTSR    +  M        T+K L IPDE +I M+ ++    AR
Sbjct: 27  NWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNAR 77


>At1g08750.2 68414.m00973 GPI-anchor transamidase, putative similar
           to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
           transamidase) {Saccharomyces cerevisiae}; contains Pfam
           profile PF01650: Peptidase C13 family
          Length = 388

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 343 NLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE-VIDMVKEETQVKAR 194
           N   ++CTSR    +  M        T+K L IPDE +I M+ ++    AR
Sbjct: 27  NWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNAR 77


>At1g08750.1 68414.m00972 GPI-anchor transamidase, putative similar
           to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
           transamidase) {Saccharomyces cerevisiae}; contains Pfam
           profile PF01650: Peptidase C13 family
          Length = 388

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 343 NLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE-VIDMVKEETQVKAR 194
           N   ++CTSR    +  M        T+K L IPDE +I M+ ++    AR
Sbjct: 27  NWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNAR 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,145,386
Number of Sequences: 28952
Number of extensions: 165485
Number of successful extensions: 439
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -