Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B12f
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1002 + 10171942-10172859,10173369-10173452                       28   4.6  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    27   6.1  
12_01_0686 - 5855216-5858263                                           27   8.1  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   8.1  

>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +3

Query: 201 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 365
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 366 IPEREPEK 389
           + +RE  K
Sbjct: 302 VRDRENRK 309


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 429 VICAPA-AXLDVVAVSQAPSPESNPDSPLPVTTMVVA 322
           +I APA   +   A SQ P P   P  P P+T++  A
Sbjct: 411 IIAAPAITVMPPPAPSQQPQPPPPPSHPTPITSVAPA 447


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 457 FSSLLPSRSGNLRACCXLGCG-SRFSGSL 374
           F+ ++PS   NLR+   LG G S FSG+L
Sbjct: 350 FTGMIPSSISNLRSLKKLGIGASGFSGTL 378


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 132 NTCNQNSDQ*WDECFY*IKTNRRR 203
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,877,815
Number of Sequences: 37544
Number of extensions: 256653
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)