Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310B12f
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.031
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_37063| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43) 27 6.3
SB_22647| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43) 27 6.3
SB_16596| Best HMM Match : Pox_A32 (HMM E-Value=0.017) 27 6.3
SB_50078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 27 8.3
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 27 8.3
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -3
Query: 417 PAAXLDVVAVSQAPSPESNPDSPLPVTTM 331
P DVVAVSQAPSPESNP+SP PV TM
Sbjct: 100 PIKYWDVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 393 AVSQAPSPESNPDSPLPVTTM 331
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.031
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 392 PFLRLPLRNRTLIPRYP 342
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 30.7 bits (66), Expect = 0.67
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 474 VDPYRYFRHYSRPGVVICAPAAXL--DVVAVSQAPSPESNPDSPLPVTTMVVA 322
+DP + R Y P + CA L + V P+P+ NPD PVT A
Sbjct: 571 LDPSHFARDYRAP--IQCATCGDLRHNTVLHRDPPAPKDNPDPEKPVTAKCTA 621
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2
Query: 2 SQRLSHACLSASRIKAIPRMA 64
SQRLSHACLS S RMA
Sbjct: 141 SQRLSHACLSISTCTVKLRMA 161
>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 351 GNQGSIPEREPEKRLPHPXXQQARKLPLRDGS 446
GN+GS + E EK LP P + R P+ + +
Sbjct: 52 GNEGSEGDGEKEKMLPSPEKKAKRTSPMTNAN 83
>SB_37063| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43)
Length = 462
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 457 FSSLLPSRSGNLRACCXLGCGSRFSGSLSGIE 362
F SLL + L+A LGC ++ +G+ +G+E
Sbjct: 125 FESLLEEGAAGLQAVESLGCSTQPAGTATGVE 156
>SB_22647| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43)
Length = 462
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 457 FSSLLPSRSGNLRACCXLGCGSRFSGSLSGIE 362
F SLL + L+A LGC ++ +G+ +G+E
Sbjct: 125 FESLLEEGAAGLQAVESLGCSTQPAGTATGVE 156
>SB_16596| Best HMM Match : Pox_A32 (HMM E-Value=0.017)
Length = 305
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 457 FSSLLPSRSGNLRACCXLGCGSRFSGSLSGIE 362
F SLL + L+A LGC ++ +G+ +G+E
Sbjct: 209 FESLLEEGAAGLQAVESLGCSTQPAGTATGVE 240
>SB_50078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 457 FSSLLPSRSGNLRACCXLGCGSRFSGSLSGIE 362
F SLL + L+A LGC ++ +G+ +G+E
Sbjct: 193 FESLLEEGAAGLQAVESLGCSTQPAGTATGVE 224
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 3 LKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 125
L D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 451 LYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 49 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 165
D NG+I F + W + LE IH + TL DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2
Query: 2 SQRLSHACLSASRIKAIPRMA 64
SQRLSHACLS S RMA
Sbjct: 117 SQRLSHACLSISTRTVKLRMA 137
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 3 LKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 125
L D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 870 LYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 238 WITFADRMVKYRRRIFQM 291
W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,548
Number of Sequences: 59808
Number of extensions: 289732
Number of successful extensions: 854
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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