Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B12f
         (488 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64037-1|CAA45408.1|  517|Homo sapiens RNA polymerase II associa...    29   8.6  
X64002-1|CAA45404.1|  517|Homo sapiens RAP74 protein.                  29   8.6  
CR456798-1|CAG33079.1|  517|Homo sapiens GTF2F1 protein.               29   8.6  
BT007097-1|AAP35761.1|  517|Homo sapiens general transcription f...    29   8.6  
BC013007-1|AAH13007.1|  517|Homo sapiens general transcription f...    29   8.6  
BC000120-1|AAH00120.1|  517|Homo sapiens general transcription f...    29   8.6  

>X64037-1|CAA45408.1|  517|Homo sapiens RNA polymerase II associated
           protein  RAP74 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 EREPEKRLPHPXXQQARKLPLRDGSSDENNDTDLRAXS 485
           E E EK+ P P  ++ RK    +  S E +D D  A S
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASS 359


>X64002-1|CAA45404.1|  517|Homo sapiens RAP74 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 EREPEKRLPHPXXQQARKLPLRDGSSDENNDTDLRAXS 485
           E E EK+ P P  ++ RK    +  S E +D D  A S
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASS 359


>CR456798-1|CAG33079.1|  517|Homo sapiens GTF2F1 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 EREPEKRLPHPXXQQARKLPLRDGSSDENNDTDLRAXS 485
           E E EK+ P P  ++ RK    +  S E +D D  A S
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASS 359


>BT007097-1|AAP35761.1|  517|Homo sapiens general transcription
           factor IIF, polypeptide 1, 74kDa protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 EREPEKRLPHPXXQQARKLPLRDGSSDENNDTDLRAXS 485
           E E EK+ P P  ++ RK    +  S E +D D  A S
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASS 359


>BC013007-1|AAH13007.1|  517|Homo sapiens general transcription
           factor IIF, polypeptide 1, 74kDa protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 EREPEKRLPHPXXQQARKLPLRDGSSDENNDTDLRAXS 485
           E E EK+ P P  ++ RK    +  S E +D D  A S
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASS 359


>BC000120-1|AAH00120.1|  517|Homo sapiens general transcription
           factor IIF, polypeptide 1, 74kDa protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 EREPEKRLPHPXXQQARKLPLRDGSSDENNDTDLRAXS 485
           E E EK+ P P  ++ RK    +  S E +D D  A S
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASS 359


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,002,065
Number of Sequences: 237096
Number of extensions: 1386674
Number of successful extensions: 3721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)