Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           30   1.3  
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     28   4.0  
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618...    28   4.0  
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    27   6.9  
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351...    27   6.9  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    27   9.1  
05_06_0042 - 25131962-25132149,25132261-25132345,25132750-251327...    27   9.1  
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925...    27   9.1  

>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 279 DHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRK 136
           DH ++K  E+K A+R RE    KK + + + MKA  E  KK    L K
Sbjct: 233 DHLFKKLTEEKAAWRKRE---HKKVQAILEDMKADLEHEKKNRRQLEK 277


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 279 DHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKK 157
           DH ++K  E+K A+R RE    +K R + + MKA  +  KK
Sbjct: 250 DHLFKKLAEEKAAWRSRE---HEKVRAILEDMKADLDHEKK 287


>03_03_0089 +
           14359650-14359889,14360859-14361120,14361633-14361813,
           14362141-14362288,14362836-14363040,14363304-14363362
          Length = 364

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 273 PYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEI 151
           P  +  +D+ AF    K++R +H N+  +M  G  + KK++
Sbjct: 96  PEVRNRDDELAFTEMIKMIRVRHNNVVPTMALGVRQLKKDL 136


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 122 TTRRSKMKRRQKNGNKKCKH*K 57
           TTRR++ +R+Q  G  KCK  K
Sbjct: 2   TTRRTRKERKQMGGGGKCKRGK 23


>04_01_0261 +
           3516461-3516629,3517729-3517823,3518724-3518834,
           3519179-3519213,3519864-3519954,3520124-3520196,
           3521127-3521257,3524325-3524720
          Length = 366

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 264 KEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKR 130
           KE+ ++    +    +RKKH  L K  ++  +KR +++  LRK++
Sbjct: 287 KELMEQSKELMELPALRKKHEELTKRYESLTKKRNEDLAKLRKEK 331


>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
            25457561-25457740,25457823-25458017,25459059-25459157,
            25459508-25460137,25460250-25460591
          Length = 1440

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 267  QKEIEDKQAFRLREKLVRK-----KHRNLYKSMKAGQEKRKKEIWLLRKKRRLHD 118
            +K   +K+  RL +K   K     K R   K+++  + + KKE  L+ K+R   D
Sbjct: 1279 EKAAAEKERLRLEQKAKAKEAEERKRRKAEKALERAEFRAKKEAELMEKRRAKRD 1333


>05_06_0042 -
           25131962-25132149,25132261-25132345,25132750-25132797,
           25133084-25133197,25133279-25133410,25134029-25134124,
           25134771-25135005,25135054-25135322,25135408-25135491,
           25136529-25136703,25138018-25138229
          Length = 545

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 288 THKDHPYQKEIEDKQAFRLREKLVRKKH--RNLYKSMKAGQEKRKKEIWLLRKK 133
           +H   P +  I+D  +   ++++   K    N YK+     + RK+  W+L +K
Sbjct: 25  SHGKDPGKPPIDDAPSSATKQRVAAAKQYIENHYKTQMKSLQDRKERRWMLERK 78


>03_06_0490 +
           34289904-34289967,34291912-34292237,34292401-34292536,
           34292651-34292793,34292880-34293003,34293562-34293963,
           34294121-34294176
          Length = 416

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 136 KTSPSRREDQR*KEGRKTETKNASTRSCFYLRFINKYYFQQL 11
           K +  RR++     G+K  T NAS  S F+ + +  +Y + L
Sbjct: 372 KPAAERRQESTTGTGKKAPTANASKNSVFWQQVLFVHYHELL 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,004
Number of Sequences: 37544
Number of extensions: 137566
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)