Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41092| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 29   3.1  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               28   4.1  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           28   4.1  
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)                     27   7.1  
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_27837| Best HMM Match : Vicilin_N (HMM E-Value=0.85)                27   7.1  
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       27   9.4  
SB_41781| Best HMM Match : TPR_1 (HMM E-Value=3.8e-21)                 27   9.4  

>SB_41092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 267 QKEIED--KQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKRRLHD 118
           ++E+ D  ++   L    + +K R LY+ +   ++K++ E+  L  KR++HD
Sbjct: 304 EEEVPDMTREEKELAVAAMPRKDRRLYEKIMHSKKKKRSEVRKLESKRKVHD 355


>SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 285 HKDHPYQKEIEDKQAFRLRE-KLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKR 130
           +K+H    +  +KQ    +E   ++++++NLY + ++  E  K+E  LL KKR
Sbjct: 75  NKEHQEYMDALNKQEVAEQEFNTMKEQYKNLYNTFQSEVETVKQETELLGKKR 127


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 267 QKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKE 154
           Q E E K+  RL +K   +K R L K  K  +EKRKKE
Sbjct: 358 QAEKEKKEKERLEKKQREEKDR-LEKKEKKEEEKRKKE 394


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 267 QKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKR 163
           QK+I++K   RLREKL R K R+  +  K  +EK+
Sbjct: 241 QKKIDEKLD-RLREKLKRVKSRDRIRDKKTLKEKK 274


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -3

Query: 267 QKEIEDKQAF--RLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKRRLHD 118
           Q+ I DK AF   LRE    ++++  +++ +A  E+ +KE   +R+KRR+ D
Sbjct: 698 QRMIPDKDAFINTLRESRT-EEYQAKFQAFQAKLEQVRKERLEVRRKRRIKD 748


>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
          Length = 341

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 267 QKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKRRLHD 118
           +KE+ +K      E LVRK      K M+   EKR+KE     K+R+L +
Sbjct: 111 KKEVYEKALSPWEEWLVRKTAEQREKQMRIR-EKRRKEKEEFEKQRKLKE 159


>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 279 DHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKE 154
           DH  +  ++ K A RLR    +KK R   KS  A    R +E
Sbjct: 146 DHELRSLLKKKDAQRLRGSCTKKKKRTKKKSPLAWDRTRSEE 187


>SB_27837| Best HMM Match : Vicilin_N (HMM E-Value=0.85)
          Length = 206

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 267 QKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKRRLHD 118
           +KE+ +K      E LVRK      K M+   EKR+KE     K+R+L +
Sbjct: 111 KKEVYEKALSPWEEWLVRKTAEQREKQMRIR-EKRRKEKEEFEKQRKLKE 159


>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 270 YQKEIEDKQAFRLREKLVRKKHRNLY 193
           Y KE   K+   LR K + KKH N Y
Sbjct: 54  YVKEYRQKEVDELRMKKMAKKHGNFY 79


>SB_41781| Best HMM Match : TPR_1 (HMM E-Value=3.8e-21)
          Length = 430

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 264 KEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKKRRLH 121
           +EI+  Q     +KLV+  +RN Y+   AG + RK++      K R H
Sbjct: 344 EEIKTLQLSGPYQKLVKDDNRNDYEEADAGAQHRKRDDDHSTTKPRAH 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,427
Number of Sequences: 59808
Number of extensions: 156185
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)