Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.82 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
 Frame = +3

Query: 348 GPNHHHHF-----LLHLEMSPHQPPADIA***LFQHHYLQSQAHFAPPC 479
           GP HHHH      L HL     QPP        + +    S A FA PC
Sbjct: 348 GPPHHHHHHQTQSLQHLHY--RQPPTLSESYSSYVNSMYASGAQFATPC 394


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 228 EKLVRKKHRNLYKSMKAGQEKRKKEI 151
           EKL+  KHR    S+KA  + +   I
Sbjct: 652 EKLMMLKHREFRSSIKASDKLKDSRI 677


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +3

Query: 354 NHHHHFLLHLEMSPHQP 404
           NHHHH         H+P
Sbjct: 146 NHHHHLQSTAVQDHHRP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,881
Number of Sequences: 438
Number of extensions: 1554
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)