Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310B11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam... 33 0.12
At2g12875.1 68415.m01402 hypothetical protein 29 1.9
At5g65330.1 68418.m08218 MADS-box family protein contains Pfam p... 28 3.3
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 28 4.4
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 28 4.4
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 4.4
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 27 5.8
At3g58050.1 68416.m06471 expressed protein 27 7.7
>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 823
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 348 GPNHHHHFLLHLEMSPHQ 401
GP+HHHH LLH +M+ H+
Sbjct: 43 GPHHHHHHLLHRKMTLHR 60
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 343 EKETG*REEKINEGND---RCNP*RPSLSKRNRRQTGIPVTREACTK 212
EKE +EE+ EGND R +P RPS ++ R G +T K
Sbjct: 225 EKEEEEKEEEKEEGNDCWGRISPKRPSRARETRYAPGSQLTTSTVGK 271
>At5g65330.1 68418.m08218 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL78
Length = 341
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 273 PYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRK 160
P ++E A R +E RKK RNL++ ++ ++K K
Sbjct: 53 PKERETVKDMALRYKEARKRKKSRNLHEFLEKEKDKDK 90
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 291 VTHKDHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKK 133
VT P +K+ + K A + K VR+ L + +A + K+K+E LRK+
Sbjct: 389 VTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEERKKKEEEEKLRKE 441
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 291 VTHKDHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKK 133
VT P +K+ + K A + K VR+ L + +A + K+K+E LRK+
Sbjct: 342 VTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEERKKKEEEEKLRKE 394
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = -3
Query: 312 SMRVTTGVTHKDHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKEIWLLRKK 133
S+ +++ +D +K+++ K A + K VR+K L + +A K+K+E LRK+
Sbjct: 191 SLAISSVEAKEDRQGKKDVKIKVAEKKVPKHVREKQETLARWKEAEDGKKKEEEERLRKE 250
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -3
Query: 261 EIEDKQAFRLREK---LVRKKHRNLYKSM-KAGQEKRKKEIWLLRKKRR 127
E +K+ R EK L RK+ + K M + +E+RK+E LLR+K+R
Sbjct: 340 EAHEKRIRRELEKQDMLRRKREEQIRKEMERQDRERRKEEERLLREKQR 388
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -3
Query: 282 KDHPYQKEIEDKQAFRLREKLVRKKHRNLYKSMKAGQEKRKKE 154
K+ ++E ++K+ + REK +RKK R K G+EK+ E
Sbjct: 537 KEKREEEERKEKKRSKEREKKLRKKER--LKEKDKGKEKKNPE 577
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,334,510
Number of Sequences: 28952
Number of extensions: 113954
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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