Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             188   2e-48
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)        116   9e-27
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       29   1.8  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   2.3  
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   3.1  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   5.4  
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)           28   5.4  
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)          27   7.1  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     27   9.4  
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)                  27   9.4  
SB_14488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  188 bits (458), Expect = 2e-48
 Identities = 91/135 (67%), Positives = 107/135 (79%)
 Frame = -2

Query: 457 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 278
           KA KA++ V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y IIK 
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKH 197

Query: 277 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVR 98
           PLT+E+AMKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KKAYVR
Sbjct: 198 PLTTESAMKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVR 257

Query: 97  LARDYDALDVANKIG 53
           LA DYDALDV+NK+G
Sbjct: 258 LAPDYDALDVSNKVG 272


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score =  116 bits (280), Expect = 9e-27
 Identities = 56/68 (82%), Positives = 61/68 (89%)
 Frame = -2

Query: 256 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDA 77
           MKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DYDA
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDA 60

Query: 76  LDVANKIG 53
           LDV+NK+G
Sbjct: 61  LDVSNKVG 68


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -2

Query: 382 HFRRPKTFEPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKI 245
           H   P+ F PP+H   PRK  P +N  +   N+      PL   +A KKI
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKI 115


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 412 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 293
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 436 KVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 296
           K+VKGE  K+ ++     H +  K       PK PRK    S P+R   DA
Sbjct: 537 KLVKGEKSKKQKRGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 300 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 383
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
          Length = 154

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 PRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSL 448
           PRR +R+   ++ +  N P +  +F +YNL + L
Sbjct: 49  PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82


>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
          Length = 234

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = -2

Query: 376 RRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANK 197
           ++PK  + P   K P+K+  K+         K P   + A KK              A K
Sbjct: 153 KKPKAAKKPAAKKSPKKAAAKKPSKSPKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKK 212

Query: 196 HHIKAAVKK 170
              K A KK
Sbjct: 213 PAAKKAAKK 221


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 403 RKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 284
           R+++   +FR P T+ P R+P + R  +   N+MD   ++
Sbjct: 466 REMKLGANFRAPPTYGPFRNPGFQRAQM--ANQMDQNELV 503


>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
          Length = 662

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 203 CTCVNNKDQGVVIFNL-LHCCFRREREFNDVVGIH---AISLRQRLPWVFRVP 349
           CTC+ N+DQ +V  +  L   F  E   N V+G       S+R+ + W  RVP
Sbjct: 413 CTCLTNRDQVLVFASSGLWKVFSAEEVANLVLGFFRQIKESVRKGIIWGSRVP 465


>SB_14488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 439 RKVVKGEHGKRVRKIRNSVHFRRPKTFEP-PRHPKYPRKSLPKRNRMDAYNII 284
           +K+ K E  K + ++  S     P+T+EP P  PK PRKS+ +  +    NII
Sbjct: 7   KKLSKSELIKLILELEYSKPVPEPRTYEPRPPVPK-PRKSVKQMVQEYEENII 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,377
Number of Sequences: 59808
Number of extensions: 304710
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)