Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...   182   1e-46
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...   179   1e-45
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    33   0.088
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ...    29   1.4  
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc...    29   2.5  
At1g10530.1 68414.m01186 expressed protein                             28   4.4  
At1g05950.1 68414.m00624 expressed protein                             28   4.4  
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    27   7.7  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score =  182 bits (444), Expect = 1e-46
 Identities = 92/141 (65%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = -2

Query: 466 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 290
           P  KALKA + V  G+  K+  +KIR  V F RPKT   PR PKYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQ 73

Query: 289 IIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 110
           I+K+PLT+E+AMKKIEDNNTLVFIV   A+K  IK AVKK+YDI   KVNTLIRPDG KK
Sbjct: 74  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKK 133

Query: 109 AYVRLARDYDALDVANKIGII 47
           AYVRL  DYDALDVANKIGII
Sbjct: 134 AYVRLTPDYDALDVANKIGII 154


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score =  179 bits (435), Expect = 1e-45
 Identities = 91/141 (64%), Positives = 104/141 (73%), Gaps = 1/141 (0%)
 Frame = -2

Query: 466 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 290
           P  KALKA + V  G+   K+ +KIR  V F RPKT   PR  KYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQ 73

Query: 289 IIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 110
           I+K+PLT+E+AMKKIEDNNTLVFIV   A+K  IK AVKK+YDI   KVNTLIRPDG KK
Sbjct: 74  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKK 133

Query: 109 AYVRLARDYDALDVANKIGII 47
           AYVRL  DYDALDVANKIGII
Sbjct: 134 AYVRLTPDYDALDVANKIGII 154


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 208 SANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 110
           SA+K  IK  ++ LY  +V KVNTL   DGKKK
Sbjct: 38  SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69


>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
           dependent protease VAR2 GI:7650138 from [Arabidopsis
           thaliana]
          Length = 695

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 231 PWSLLFTQVQTSTISRLQSRNSM 163
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610


>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
           dependent protease GI:7650138 from [Arabidopsis
           thaliana]
          Length = 685

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 231 PWSLLFTQVQTSTISRLQSRNSM 163
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603


>At1g10530.1 68414.m01186 expressed protein
          Length = 166

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 445 AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEP 353
           + +KV + + GK+ R IRNS    + KT+ P
Sbjct: 126 SDKKVPEKKQGKQFRVIRNSTSLLKSKTWRP 156


>At1g05950.1 68414.m00624 expressed protein
          Length = 590

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 187 KAAVKKLYDINVAKVNTLI-RPDGKKKAYVRLARDY 83
           KAA+K+ Y+I   KV  L+  P  + KA  RL   Y
Sbjct: 291 KAALKRRYEIKAKKVAALLSHPGARGKATTRLQNRY 326


>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 370 PKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIED 239
           PK FE P+ P++P+  LPK        + K P   +  + K+ +
Sbjct: 52  PK-FEVPKLPEFPKPELPKLPEFPKPELPKIPEIPKPELPKVPE 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,813,825
Number of Sequences: 28952
Number of extensions: 214320
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)