Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   178   5e-46
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   177   6e-46
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.7  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   1.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   3.9  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.0  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  178 bits (433), Expect = 5e-46
 Identities = 86/156 (55%), Positives = 113/156 (72%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 340
           PRG LK+N +H+ ++++      +K   W GS+K  A +R+V S + NMI GVT+GF+YK
Sbjct: 31  PRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYK 89

Query: 339 MRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSL 160
           MR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+I+EGNSL
Sbjct: 90  MRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSL 149

Query: 159 EDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 52
           E+VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 150 ENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  177 bits (432), Expect = 6e-46
 Identities = 87/156 (55%), Positives = 112/156 (71%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 340
           PRGVLK+N + + ++++      +K   W GS+K  A +RT  S + NMI GVT+GF+YK
Sbjct: 31  PRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYK 89

Query: 339 MRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSL 160
           MR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+IIEGNSL
Sbjct: 90  MRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSL 149

Query: 159 EDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 52
           E+VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 150 ENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 207 NSPKQKDELIIEGNSLEDVSSSAALIQQS 121
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = -3

Query: 162 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 55
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 495  FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 358
            F H +VD+ +    L + E WF        + T+CS + N++  VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  HNSCFLRYIKTIQELSDILILD 114
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 410 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 520
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 216  TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 106
            +V+N    K EL +EG  L+ V ++  ++   T+  +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,156
Number of Sequences: 5004
Number of extensions: 41433
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)