Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    204   3e-53
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   203   8e-53
03_06_0712 - 35683814-35684065,35685296-35685466                       27   6.9  
10_08_0406 - 17688069-17690643,17691065-17691132                       27   9.1  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   9.1  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  204 bits (499), Expect = 3e-53
 Identities = 96/160 (60%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY 343
           PRG L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT  SHV+N+I GVTKG++Y
Sbjct: 30  PRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRY 89

Query: 342 KMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNS 163
           KMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL+++GN 
Sbjct: 90  KMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGND 149

Query: 162 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 43
           +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 150 IELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  203 bits (495), Expect = 8e-53
 Identities = 96/162 (59%), Positives = 123/162 (75%), Gaps = 3/162 (1%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 349
           PRG L RNFKHL +D +++     R L+V+ WFG+++ +AA+RT  SHV+N+I GVTKG+
Sbjct: 21  PRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGY 80

Query: 348 QYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEG 169
           +YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL+++G
Sbjct: 81  RYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDG 140

Query: 168 NSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 43
           N +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 141 NDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 510 VLKRNF-KHLAVDIRMVNPRLLKVE 439
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 30  VFICHLAQQLFSQIHKDHP 86
           +  CHLA +L    H DHP
Sbjct: 673 ILACHLATELLDNEHDDHP 691


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 309 NCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED 154
           N ++ +  +I +  NF+ EK+    K+  G   +N+ K++ E   + N+L+D
Sbjct: 499 NSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKD 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,221
Number of Sequences: 37544
Number of extensions: 254627
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)