Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   217   4e-57
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    33   0.094
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.50 
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   3.5  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   8.1  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  217 bits (530), Expect = 4e-57
 Identities = 97/160 (60%), Positives = 125/160 (78%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 340
           PRG ++++F+HL +++  +    L+V KWFG +KELAA+RTVCSH++NMIKGVT GF+YK
Sbjct: 30  PRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYK 89

Query: 339 MRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSL 160
           MR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN +
Sbjct: 90  MRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDV 149

Query: 159 EDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 40
           + VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 150 QFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 49  HNSCFLRYIKTIQELSDILILDCSRLLNESSRARDIFQR 165
           +N+C LR IK +  L+ +L  + SRL N  SR RD+F++
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 356 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 493
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = -3

Query: 489 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 325
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 324 AHF 316
            +F
Sbjct: 421 LNF 423


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 40  VI*HNSCFLRYIKTIQELSDILILDCSRLLNESSRARD 153
           ++ HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -3

Query: 363  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 226
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 223 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 357
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 83  SKNFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAI 232
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 83  SKNFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAI 232
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 WRVNDSHTRCHLYPSD 246
           W V+D  T C+L+PSD
Sbjct: 71  WMVSDYDTSCYLFPSD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,550,767
Number of Sequences: 27780
Number of extensions: 234184
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)