Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310B08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   191   3e-49
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   190   5e-49
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   190   5e-49
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   4.4  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   4.4  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   5.8  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   7.7  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  191 bits (465), Expect = 3e-49
 Identities = 92/165 (55%), Positives = 118/165 (71%), Gaps = 5/165 (3%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 355
           PRG L R+FKHL +D +++       R LK++ WFGS+K  A++RT  SHV+N+I GVT+
Sbjct: 30  PRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQ 89

Query: 354 GFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELII 175
           GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KDE+I+
Sbjct: 90  GFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIIL 149

Query: 174 EGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 40
           EGN +E VS S ALI Q   VK KDIRKFLDG+YVSEK  + +++
Sbjct: 150 EGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  190 bits (463), Expect = 5e-49
 Identities = 90/165 (54%), Positives = 120/165 (72%), Gaps = 5/165 (3%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 355
           PRG L R+FKHL +D +++       + LK++ WFG++K  A++RT  SHV+N+I GVT+
Sbjct: 30  PRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTR 89

Query: 354 GFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELII 175
           GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KDE+++
Sbjct: 90  GFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVL 149

Query: 174 EGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 40
           +GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 150 DGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  190 bits (463), Expect = 5e-49
 Identities = 90/165 (54%), Positives = 120/165 (72%), Gaps = 5/165 (3%)
 Frame = -3

Query: 519 PRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 355
           PRG L R+FKHL +D +++       + LK++ WFG++K  A++RT  SHV+N+I GVT+
Sbjct: 30  PRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTR 89

Query: 354 GFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELII 175
           GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KDE+++
Sbjct: 90  GFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVL 149

Query: 174 EGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 40
           +GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 150 DGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 315 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 136
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 135 LIQQSTTVKNK 103
            +QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 170 PSMISS-SFCFGELTTVTPGAI 232
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = -3

Query: 258 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 91
           G+K    +++A     + SP+ K +L+ I+G + EDVS S     L  + T  + KD+  
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695

Query: 90  FLDG 79
            +DG
Sbjct: 696 VIDG 699


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 406 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 501
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,970
Number of Sequences: 28952
Number of extensions: 212434
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)