Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310B05f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit ... 221 6e-57
UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN full... 180 1e-44
UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Re... 117 2e-25
UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1; ... 111 7e-24
UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit ... 107 2e-22
UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17; Asco... 99 3e-20
UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1; ... 99 5e-20
UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1; ... 96 4e-19
UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit ... 88 1e-16
UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative; ... 82 7e-15
UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1; Di... 74 2e-12
UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gamb... 68 1e-10
UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD CH... 67 2e-10
UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit ... 65 8e-10
UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1; Gu... 60 4e-08
UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus... 46 8e-07
UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1; Staphyloth... 53 3e-06
UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1; ... 53 5e-06
UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1; ... 52 8e-06
UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10; Magnoliop... 50 2e-05
UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2... 50 2e-05
UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,... 50 3e-05
UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha subu... 45 4e-05
UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha subu... 50 4e-05
UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III ... 50 4e-05
UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1; ... 49 6e-05
UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2; ... 49 7e-05
UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2; Ostreococc... 48 1e-04
UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative... 48 1e-04
UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, wh... 48 1e-04
UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1; Dictyo... 48 2e-04
UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III,... 48 2e-04
UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D; ... 47 2e-04
UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II s... 47 3e-04
UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2; Cry... 47 3e-04
UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D; ... 47 3e-04
UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D; ... 47 3e-04
UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunction... 46 4e-04
UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putativ... 46 4e-04
UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha subu... 46 5e-04
UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3; Thermoprot... 46 5e-04
UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3; Pezizomy... 46 7e-04
UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D; ... 46 7e-04
UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2... 45 0.001
UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putativ... 45 0.001
UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III ... 44 0.002
UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 44 0.003
UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 44 0.003
UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III s... 44 0.003
UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III ... 43 0.004
UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, wh... 43 0.005
UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D; ... 42 0.006
UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putativ... 42 0.011
UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D; ... 42 0.011
UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4; ... 41 0.015
UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa sub... 41 0.020
UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D; ... 40 0.035
UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D; ... 39 0.060
UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase, sub... 39 0.080
UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit ... 39 0.080
UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 38 0.11
UniRef50_Q8PV16 Cluster: DNA-directed RNA polymerase subunit D; ... 38 0.11
UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D; ... 38 0.14
UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia intes... 38 0.18
UniRef50_Q5KCD2 Cluster: Helicase, putative; n=2; Filobasidiella... 38 0.18
UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D; ... 38 0.18
UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third la... 37 0.32
UniRef50_A0D910 Cluster: Chromosome undetermined scaffold_41, wh... 36 0.74
UniRef50_Q00813 Cluster: DNA-directed RNA polymerase subunit D; ... 36 0.74
UniRef50_Q18767 Cluster: Putative uncharacterized protein srsx-3... 35 1.3
UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lambl... 34 2.3
UniRef50_UPI00015B5019 Cluster: PREDICTED: similar to GA20163-PA... 33 3.0
UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain; ... 33 3.0
UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosae... 33 3.0
UniRef50_UPI00006C1172 Cluster: PREDICTED: hypothetical protein;... 33 4.0
UniRef50_Q7KTG2 Cluster: CG15828-PB, isoform B; n=5; Eukaryota|R... 33 4.0
UniRef50_Q3A071 Cluster: Cation-multidrug efflux pump; n=6; Bact... 32 6.9
UniRef50_Q2HB13 Cluster: Putative uncharacterized protein; n=1; ... 32 6.9
UniRef50_P48969 Cluster: Protein DVR-1 homolog precursor; n=4; E... 32 6.9
UniRef50_Q8FTG7 Cluster: Putative uncharacterized protein; n=7; ... 32 9.2
UniRef50_Q3E0S1 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2
UniRef50_A6G3J0 Cluster: DNA-methyltransferase-like protein; n=1... 32 9.2
UniRef50_A3ZYV7 Cluster: Iduronate-2-sulfatase; n=1; Blastopirel... 32 9.2
UniRef50_Q4WFJ1 Cluster: Glycosyl hydrolase, putative; n=18; Tri... 32 9.2
>UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=36; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Homo sapiens (Human)
Length = 275
Score = 221 bits (541), Expect = 6e-57
Identities = 100/161 (62%), Positives = 125/161 (77%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVE 158
KWNPTAGV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +F+YNVE
Sbjct: 175 KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVE 234
Query: 157 SSGALKPENIVLMGIXXXXXXXXXXXXXLAQEAQNDALAIN 35
S G+L+PE IVL + L+ E Q+D L IN
Sbjct: 235 SCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN 275
>UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A130010H16
product:polymerase (RNA) II (DNA directed) polypeptide
C, full insert sequence; n=8; Mammalia|Rep: 16 days
neonate thymus cDNA, RIKEN full-length enriched library,
clone:A130010H16 product:polymerase (RNA) II (DNA
directed) polypeptide C, full insert sequence - Mus
musculus (Mouse)
Length = 332
Score = 180 bits (439), Expect = 1e-44
Identities = 78/114 (68%), Positives = 97/114 (85%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHA
Sbjct: 115 VTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNK 176
KWNPTA V+ EYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP +
Sbjct: 175 KWNPTAXVALEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPER 228
>UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Rep:
ADL120Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 311
Score = 117 bits (281), Expect = 2e-25
Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Frame = -2
Query: 430 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY---PKP 260
EA+ +LI KLRKGQEL+L+ AKKG KEHAKW+P A + FEYDP N +RHT Y P
Sbjct: 138 EANGVLICKLRKGQELRLKCVAKKGIAKEHAKWSPAAAIEFEYDPWNKLRHTDYWHEQDP 197
Query: 259 D-EWPKSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSGALKPENIVLMGI 113
+ EWP S++ E + E D F++ AKPN F+ NVES G++ + +V+ GI
Sbjct: 198 EAEWPHSKNCEFEDPPNEDDQFDYSAKPNTFYMNVESVGSIPSDQVVIRGI 248
>UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 329
Score = 111 bits (268), Expect = 7e-24
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQ--ADYGEADEILIIKLRKGQELKLRAYAKKGFGKE 344
+ A + D P +H D + G I+++K+ KGQEL +R A+KGF KE
Sbjct: 131 IENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKGFAKE 190
Query: 343 HAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEWPKSEHTELNEDQYE-ADFNWEAKPN 179
HAKW+P + V FEYDP N +RHT Y EWP+ + E E E A F++ K +
Sbjct: 191 HAKWSPCSAVGFEYDPHNALRHTTYWYEFDAKQEWPEGPNAECEEPPQEGAPFDYNKKAS 250
Query: 178 KFFYNVESSGALKPENIVLMGI 113
KF+++VE+SG++ P IV G+
Sbjct: 251 KFYFDVEASGSMHPAEIVETGL 272
>UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 318
Score = 107 bits (257), Expect = 2e-22
Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Frame = -2
Query: 430 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PK 263
E + +LI KLRKGQELKL AKKG KEHAKW P A + FEYDP N ++HT Y
Sbjct: 138 EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDS 197
Query: 262 PDEWPKSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSGALKPENIVLMGI 113
EWP+S++ E + E D F+++A+ + F+ NVES G++ + +V+ GI
Sbjct: 198 AKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGI 248
>UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17;
Ascomycota|Rep: RNA polymerase II subunit 3 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 392
Score = 99 bits (238), Expect = 3e-20
Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Frame = -2
Query: 415 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY---PKP-DEWP 248
LI KLR+GQELK+ AKKG KEHAKW PTA V FEYDP N +RH Y P EWP
Sbjct: 206 LICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPIKEWP 265
Query: 247 KSEHTEL-NEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
S + + + F+++A+PN F+ +VES G L+P+ I+ GI
Sbjct: 266 VSANAAWEHAAPPDQPFDYDAQPNNFYIDVESIGNLEPDMIIQQGI 311
>UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 576
Score = 99.1 bits (236), Expect = 5e-20
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
Frame = -2
Query: 415 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY---PKP-DEWP 248
+I KLR+GQE+K+ AKKG KEHAKW PTA V FEYDP N ++H Y P EWP
Sbjct: 174 VICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWP 233
Query: 247 KSEHTELNED-QYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
S + E Q + F+++A+P+ F+ +VES G L+P+ IV GI
Sbjct: 234 ISANAEWETPAQPDMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGI 279
>UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 330
Score = 96.3 bits (229), Expect = 4e-19
Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 5/107 (4%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRH-TLYPK---PDEW 251
+++ KLR+ QE+ +R AKKG KEHAKW P + FEYDP N +RH L+ + +EW
Sbjct: 154 VILFKLRRNQEVHIRCVAKKGIAKEHAKWCPATAIGFEYDPHNKLRHLDLWYESNAKEEW 213
Query: 250 PKSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSGALKPENIVLMGI 113
P SE+ E + F+++A PN+F+++VE+ GAL P+ IV G+
Sbjct: 214 PLSENAIREPPPQEGEPFDYDAVPNRFYFDVETCGALDPDVIVQEGL 260
>UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit
RPB3-A; n=14; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB3-A - Arabidopsis thaliana
(Mouse-ear cress)
Length = 319
Score = 87.8 bits (208), Expect = 1e-16
Identities = 43/82 (52%), Positives = 56/82 (68%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S+DP V PV D +D E I+I+KLR+GQELKLRA A+KG GK+HA
Sbjct: 120 VTSRDLYSADPTVTPVDFTI-DSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHA 178
Query: 337 KWNPTAGVSFEYDPDNIMRHTL 272
KW+P A V+F Y+PD I+ +
Sbjct: 179 KWSPAATVTFMYEPDIIINEDM 200
>UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative;
n=2; Filobasidiella neoformans|Rep: RNA polymerase II
subunit 3, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 377
Score = 82.2 bits (194), Expect = 7e-15
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEW 251
ILI K+ KGQE+ + A KG K HAKW+P + V+FEYDP N +RHT + + EW
Sbjct: 191 ILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTTHWFETDERAEW 250
Query: 250 PKSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSGALKPENIVLMGI 113
P S + A+ F++ A P+ F+++ ES G++ ++V G+
Sbjct: 251 PLSSNAAFEPPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGL 297
>UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 302
Score = 73.7 bits (173), Expect = 2e-12
Identities = 37/93 (39%), Positives = 57/93 (61%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT++DL S + V+PV+S+ + EI I+KLR+GQE+KLRA AKKG GKEHA
Sbjct: 119 VTSSDLLSQNSAVIPVSSQVTSSNSEQ-----EIPIVKLRRGQEIKLRAIAKKGVGKEHA 173
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 239
KW+P+ ++++ P ++ + + K E
Sbjct: 174 KWSPSCVATYQFQPIIVLNQNRIDELTDQQKEE 206
Score = 39.1 bits (87), Expect = 0.060
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = -2
Query: 193 EAKPNKFFYNVESSGALKPENIVLMGI 113
E K +KF + VESSGALKPE+IVL I
Sbjct: 257 EQKQDKFIFTVESSGALKPEDIVLYAI 283
>UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000012965 - Anopheles gambiae
str. PEST
Length = 252
Score = 68.1 bits (159), Expect = 1e-10
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Frame = -2
Query: 478 VPVTSRHRDEDQADYGEADE-ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 302
VP+ ++ +A G D+ ILI K+R G E ++ +A KG GK+HAK++P A VS+
Sbjct: 124 VPIGNQATIYTEAAVGPIDDDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRL 183
Query: 301 DPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENI 128
PD + Y K + Q N F + VES GALKPE I
Sbjct: 184 LPDIKLNRPAYVKDARYDSCSRNVYRYPQLADAVTIARVRNHFIFTVESLGALKPEVI 241
>UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD
CHAIN; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE II THIRD CHAIN - Encephalitozoon cuniculi
Length = 240
Score = 67.3 bits (157), Expect = 2e-10
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Frame = -2
Query: 505 DLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
D+ +D + V++R D+ D +I KL + Q LK R +KG GK HAKW+P
Sbjct: 96 DVVHTDDTLRTVSTRDIVCDEEDVIIKSGPVITKLARDQGLKARCIGRKGVGKTHAKWSP 155
Query: 325 TAGVSFEYDPDNIMRHTLY----PKPDEWPKSEHTELN 224
+ +SFEYD DN+ R T Y +EWP E N
Sbjct: 156 VSAISFEYDKDNVRRETNYWFEESIEEEWPGVRQGEAN 193
>UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit 3;
n=2; Ostreococcus|Rep: DNA-directed RNA polymerase II
subunit 3 - Ostreococcus lucimarinus CCE9901
Length = 318
Score = 65.3 bits (152), Expect = 8e-10
Identities = 38/82 (46%), Positives = 47/82 (57%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
VT+ DL S D RV PV+ A G ILI KLRK Q+L L+ A+KG GK+HA
Sbjct: 115 VTSDDLISHDERVKPVSFGGTGGGSAKSGG---ILIAKLRKNQQLSLKCIARKGTGKDHA 171
Query: 337 KWNPTAGVSFEYDPDNIMRHTL 272
KW+P A F+Y P + H L
Sbjct: 172 KWSPVATAVFKYTPLIDINHGL 193
>UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase II -
Guillardia theta (Cryptomonas phi)
Length = 299
Score = 59.7 bits (138), Expect = 4e-08
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
I+I KL GQ +KL+AY KKG GKEH+KWNP + + F + P
Sbjct: 139 IIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRFYP 179
>UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: RNA polymerase,
insert - Candidatus Nitrosopumilus maritimus SCM1
Length = 221
Score = 46.4 bits (105), Expect(2) = 8e-07
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = -2
Query: 505 DLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
D SD +++ ED + +D+I I++L GQ +K+ YA+ G G EHAKWN
Sbjct: 108 DSGDSDVTRTVLSNELSSEDDSITPISDKIPIVELAPGQRIKVECYARLGRGTEHAKWN- 166
Query: 325 TAGVSFEYDPD 293
+A VS + D
Sbjct: 167 SANVSMLTETD 177
Score = 28.7 bits (61), Expect(2) = 8e-07
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 187 KPNKFFYNVESSGALKPENIVLMGI 113
K ++ VES+GAL PE I+L G+
Sbjct: 178 KDDERILTVESTGALNPEQIILSGV 202
>UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1;
Staphylothermus marinus F1|Rep: RNA polymerase, insert -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 280
Score = 53.2 bits (122), Expect = 3e-06
Identities = 32/73 (43%), Positives = 41/73 (56%)
Frame = -2
Query: 511 TADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKW 332
+ DLK+SDP V PV D I II L K QE++L AYA+ G GKEHAKW
Sbjct: 115 SGDLKTSDPDVKPVY--------------DNIPIIVLGKNQEIRLEAYARLGRGKEHAKW 160
Query: 331 NPTAGVSFEYDPD 293
+P + + +Y D
Sbjct: 161 SPVSVAAHKYIAD 173
>UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 350
Score = 52.8 bits (121), Expect = 5e-06
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMR 281
D+IL++KLR GQ++ L +A+KG G +HAK++P A S+ P I+R
Sbjct: 193 DDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILR 240
>UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 320
Score = 52.0 bits (119), Expect = 8e-06
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDE 254
D+ILI KLR GQEL L + +KG GK+HAK++P A ++ P L P PDE
Sbjct: 238 DKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPH---IQLLQPIPDE 291
>UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10;
Magnoliophyta|Rep: RNA polymerase subunit - Arabidopsis
thaliana (Mouse-ear cress)
Length = 385
Score = 50.4 bits (115), Expect = 2e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 284
+ILI KL GQE++L A+A KG GK HAKW+P A + P+ ++
Sbjct: 238 DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVL 283
>UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2;
Tetrahymena thermophila|Rep: Conjugation stage-specific
protein - Tetrahymena thermophila
Length = 310
Score = 50.4 bits (115), Expect = 2e-05
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = -2
Query: 484 RVVPVTSRHRDEDQADYGEADE--ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 311
R + V S RDE YG E I IIKL KGQ++ A+KG GK H+KWNP +
Sbjct: 129 RPIKVYSILRDE----YGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCIST 184
Query: 310 FEYDPDNI 287
F +P+ I
Sbjct: 185 FSVEPEII 192
>UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,
RpoD; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit D, RpoD -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 274
Score = 50.0 bits (114), Expect = 3e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D I ++KL++G++L + A AK G+GKEHAKW PT ++ P+
Sbjct: 120 DTIPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPTTVCVYKQYPE 163
>UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha
subunit/40 kD subunit; n=1; Cenarchaeum symbiosum|Rep:
DNA-directed RNA polymerase, alpha subunit/40 kD subunit
- Cenarchaeum symbiosum
Length = 212
Score = 45.2 bits (102), Expect(2) = 4e-05
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = -2
Query: 499 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWN 329
++++ R V ++S ED + +D I I++L GQ +K+ AYA+ G G EHAKWN
Sbjct: 98 EAAETRTV-LSSELVSEDSSVKPISDTIPIVELAPGQRIKVEAYARLGRGTEHAKWN 153
Score = 24.2 bits (50), Expect(2) = 4e-05
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 244 SEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 113
+EH + N K ++ +ES+GA+ P +VL G+
Sbjct: 147 TEHAKWNSSNVSV-LTATDKEDERILTIESTGAMDPAQLVLEGV 189
>UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase, alpha subunit, putative - Leishmania major
Length = 442
Score = 49.6 bits (113), Expect = 4e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -2
Query: 454 DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 305
++D A + +IL+ KL GQ +KL+A A KGFG HAKW+P + +E
Sbjct: 262 EDDDAVFLVHPDILLTKLGPGQRIKLKAIAVKGFGAVHAKWSPVSACYYE 311
>UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=45; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC1 - Homo sapiens
(Human)
Length = 346
Score = 49.6 bits (113), Expect = 4e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
>UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1;
Thermofilum pendens Hrk 5|Rep: RNA polymerase, insert
precursor - Thermofilum pendens (strain Hrk 5)
Length = 283
Score = 49.2 bits (112), Expect = 6e-05
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
I I+KL KGQ++ L A A+ G G++HAKW P V ++Y P
Sbjct: 129 IPILKLGKGQKISLTAIARMGTGRQHAKWQPVGPVGYKYKP 169
>UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 366
Score = 48.8 bits (111), Expect = 7e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = -2
Query: 427 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
+D+IL+ KLR GQE++ +A KG G++HAK++P A S+ P
Sbjct: 215 SDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLP 258
>UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2;
Ostreococcus|Rep: RNA polymerase subunit - Ostreococcus
tauri
Length = 382
Score = 48.0 bits (109), Expect = 1e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D+IL++KL GQE++L + KG G+EH+KW+P + P+
Sbjct: 228 DDILLVKLAPGQEIELECHCVKGIGQEHSKWSPVGTCWYRMVPE 271
>UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative;
n=7; Plasmodium|Rep: DNA-directed RNA polymerase I,
putative - Plasmodium berghei
Length = 334
Score = 48.0 bits (109), Expect = 1e-04
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE----YDPDNIMRHTLYPKPD 257
D ILI KL GQE++L + +KG GK HAKW+P ++ +D D + T Y K D
Sbjct: 188 DNILITKLGNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPTFDFDVHEKFTNYEKKD 247
>UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 316
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 272
I+I KLR+ QEL LR +KG GK HAKW+P ++ P +++ L
Sbjct: 177 IIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQL 225
>UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase III
subunit - Dictyostelium discoideum AX4
Length = 345
Score = 47.6 bits (108), Expect = 2e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
D+I I+KLR GQ + ++ Y +K G+EH KW+P S+ P
Sbjct: 198 DDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQP 240
>UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III, 40
kDa polypeptide, putative; n=3; Piroplasmida|Rep:
DNA-directed RNA polymerases I and III, 40 kDa
polypeptide, putative - Theileria annulata
Length = 329
Score = 47.6 bits (108), Expect = 2e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -2
Query: 496 SSDPRVVPVTSRHRD--EDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 323
S+D + VP+++ +D +ILI KL GQE+ L Y +KG GK H+KW+P
Sbjct: 151 SNDLKWVPLSNNQEIMFKDNPPKPVYGDILITKLGPGQEIDLNMYLEKGIGKVHSKWSPV 210
Query: 322 AGVSFEYDP 296
+ +++ P
Sbjct: 211 STAVYKFMP 219
>UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D;
n=5; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit D - Pyrococcus furiosus
Length = 261
Score = 47.2 bits (107), Expect = 2e-04
Identities = 29/64 (45%), Positives = 33/64 (51%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
V + DLKS DP V PV I I+KL +GQ L AYAK G GK+HA
Sbjct: 101 VYSGDLKSDDPDVKPVNPN--------------IPIVKLAEGQRLVFNAYAKLGRGKDHA 146
Query: 337 KWNP 326
KW P
Sbjct: 147 KWQP 150
>UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 283
Score = 46.8 bits (106), Expect = 3e-04
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 517 VTTADLKS-SDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEH 341
VT+ DL S D RV PV ++ + D I+I +L Q + + Y KKG GK H
Sbjct: 106 VTSNDLVSIGDKRVAPVNYKN---------DVDPIVITQLGPRQNIHMVCYVKKGTGKFH 156
Query: 340 AKWNPTAGVSFE 305
AKWNPT F+
Sbjct: 157 AKWNPTCQCVFQ 168
>UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase I -
Cryptosporidium hominis
Length = 344
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEA--DEILIIKLRKGQELKLRAYAKKGFGKE 344
+T+ + S D +P++ R + + D+ILI KLR GQ ++ Y +K G+
Sbjct: 162 ITSKAIYSKDLVWIPLSDNQRKKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGRV 221
Query: 343 HAKWNPTAGVSFEYDPD 293
HAKW+P S+ P+
Sbjct: 222 HAKWSPVCTASYRLLPE 238
>UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit D - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 281
Score = 46.8 bits (106), Expect = 3e-04
Identities = 31/88 (35%), Positives = 45/88 (51%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
V + DL++SDP V PV D + I+ + Q L+L+AYA+ G+G+EHA
Sbjct: 111 VYSGDLETSDPDVRPVY--------------DNMPIVVMAPDQRLRLQAYARLGYGREHA 156
Query: 337 KWNPTAGVSFEYDPDNIMRHTLYPKPDE 254
KW P + + Y P I+ L DE
Sbjct: 157 KWMPVSVAAHRYLP--ILEFNLDEMSDE 182
>UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit D - Methanobacterium
thermoautotrophicum
Length = 264
Score = 46.8 bits (106), Expect = 3e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
+I ++KL EL+L A A+ G G+EHAKW PT +++Y P
Sbjct: 124 DIPLVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYKYYP 165
>UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunctional
aminoacyl-tRNA synthetase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to bifunctional aminoacyl-tRNA
synthetase - Nasonia vitripennis
Length = 1549
Score = 46.4 bits (105), Expect = 4e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -2
Query: 427 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
AD+ILI K+R QE+ +A KG GK+HAK++P A ++ P+
Sbjct: 1399 ADDILICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPE 1443
>UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putative;
n=5; Plasmodium|Rep: DNA-directed RNA polymerase II,
putative - Plasmodium falciparum (isolate 3D7)
Length = 335
Score = 46.4 bits (105), Expect = 4e-04
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPK-PDEWPKS 242
I I+ L K Q L ++ A KG GK HAKW P A VS+ D +++H L K +E
Sbjct: 149 IPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYRIDHKVLIKHNLIDKLSNEHKLL 207
Query: 241 EHTELNEDQY 212
LN+D Y
Sbjct: 208 LANNLNKDCY 217
>UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=4; Trypanosoma|Rep: DNA-directed
RNA polymerase, alpha subunit, putative - Trypanosoma
cruzi
Length = 393
Score = 46.0 bits (104), Expect = 5e-04
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = -2
Query: 454 DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHT 275
DED+ D I++ KL GQ LKLRA A KG G HAKW P + +E +R
Sbjct: 222 DEDRVFLVHPD-IILTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLREP 280
Query: 274 L 272
+
Sbjct: 281 I 281
>UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3;
Thermoproteaceae|Rep: RNA polymerase, insert -
Caldivirga maquilingensis IC-167
Length = 305
Score = 46.0 bits (104), Expect = 5e-04
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = -2
Query: 502 LKSSDPRVVPVTSRHRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
+K++D +VV V ++ D D+ + LI+K+ KGQ L + AYAK G ++HAKW
Sbjct: 102 IKAND-QVVSVYAKDLIPDDPDFAPVYPDTLIVKMSKGQVLSIEAYAKLGRARDHAKWQA 160
Query: 325 TAGVSFEYDP 296
S+ Y P
Sbjct: 161 CL-ASYYYYP 169
>UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3;
Pezizomycotina|Rep: RNA polymerase I and III -
Aspergillus oryzae
Length = 373
Score = 45.6 bits (103), Expect = 7e-04
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD-NIMRHTL 272
+ILI KLR GQ++ L + KG G +HAK++P A S+ PD I+R L
Sbjct: 209 DILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPDIQILRPIL 259
>UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit D - Pyrobaculum aerophilum
Length = 260
Score = 45.6 bits (103), Expect = 7e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMR 281
+I I+KL KGQ + L AYAK G K+HAKW A S+ Y P +++
Sbjct: 125 DIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASYYYYPKVVVK 170
>UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2;
Cryptosporidium|Rep: Conjugation stage-specific protein
- Cryptosporidium hominis
Length = 355
Score = 45.2 bits (102), Expect = 0.001
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = -2
Query: 481 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 302
+VP+ +D D D G + ILI KL GQ + +R A KG GK HAKW P + +F
Sbjct: 130 LVPMPVPKKD-DSVD-GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATFTN 187
Query: 301 DPDNIMRHTL 272
+ D + ++L
Sbjct: 188 EADVRINYSL 197
>UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase ii,
putative - Theileria annulata
Length = 354
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = -2
Query: 433 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
G D I I+KL++GQ + ++ A KG GK HAKW A V+++ +P
Sbjct: 151 GATDGIPIVKLKRGQSINMKLTASKGLGKFHAKW-IVANVNYKMEP 195
>UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III 40
kDa polypeptide; n=9; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III 40 kDa
polypeptide - Ajellomyces capsulatus NAm1
Length = 380
Score = 44.0 bits (99), Expect = 0.002
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
+IL+ KLR GQ++ + + KG G +HAK++P A S+ PD
Sbjct: 211 DILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPD 253
>UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 336
Score = 43.6 bits (98), Expect = 0.003
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
D I++ KLR+ QE+ +KG GK HAKW+P + P+
Sbjct: 197 DNIIVAKLRENQEIICEVICQKGIGKTHAKWSPVCTAYYRLMPE 240
>UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 322
Score = 43.6 bits (98), Expect = 0.003
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
+ I KL GQ L+L AY +KG G+ HAKW+P
Sbjct: 168 VTITKLAPGQTLRLAAYIRKGIGRNHAKWSP 198
>UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III
subunit Rpc40, putative; n=5; Pezizomycotina|Rep:
DNA-directed RNA polymerase I and III subunit Rpc40,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 374
Score = 43.6 bits (98), Expect = 0.003
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 293
+ILI KLR GQ++ + + KG G +HAK++P A ++ PD
Sbjct: 210 DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPD 252
>UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=16; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III subunit RPAC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 335
Score = 43.2 bits (97), Expect = 0.004
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD-NIMR 281
+IL+ KLR GQE+ L+A+ G G +HAK++P + S+ P NI++
Sbjct: 190 DILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQ 237
>UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_51,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 308
Score = 42.7 bits (96), Expect = 0.005
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -2
Query: 433 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHT 275
G+ I I +L K Q + +R +A KGFGK HAKW P +F ++ + H+
Sbjct: 147 GKEVGIPITRLGKNQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHS 199
>UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit D - Aeropyrum pernix
Length = 286
Score = 42.3 bits (95), Expect = 0.006
Identities = 26/74 (35%), Positives = 37/74 (50%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
+T DL SDP+V PV Y E +I + GQ + ++A+A+ G GKEH
Sbjct: 118 ITAGDLSISDPQVKPV-----------YPETP---LIYVAPGQRIHVQAFARLGRGKEHT 163
Query: 337 KWNPTAGVSFEYDP 296
KW+P + Y P
Sbjct: 164 KWSPASLSVLRYTP 177
>UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putative;
n=1; Babesia bovis|Rep: DNA-directed RNA polymerase II,
putative - Babesia bovis
Length = 382
Score = 41.5 bits (93), Expect = 0.011
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
I I+KL++GQ L L+ A KG GK HAKW A V+++ +P
Sbjct: 195 IPIVKLKRGQCLSLKMTATKGLGKFHAKW-MVANVAYKMEP 234
>UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit D - Thermoplasma volcanium
Length = 271
Score = 41.5 bits (93), Expect = 0.011
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKS 242
+I I+KL Q + + A A G KEHAKW T+GV+++Y + + L+ ++W K
Sbjct: 134 DIPIVKLGAKQAILITAEAILGTAKEHAKWQVTSGVAYKYHREFEVNKKLF---EDWAKI 190
Query: 241 EH----TELNEDQYEADFNWEAKPNKFFYNVESSG 149
+ + L+ED+ F + N ES G
Sbjct: 191 KERCPKSVLSEDENTIVFTDDYGCNDLSILFESDG 225
>UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4;
Methanomicrobiales|Rep: RNA polymerase, insert precursor
- Methanoculleus marisnigri (strain ATCC 35101 / DSM
1498 / JR1)
Length = 276
Score = 41.1 bits (92), Expect = 0.015
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 439 DYGEADE-ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
D ADE I II+L + Q+L L A A G GKEHAKW T ++ P
Sbjct: 115 DAAPADEKIPIIELARDQKLVLEAQAIVGTGKEHAKWQATTACGYKNYP 163
>UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa
subunit; n=1; Bigelowiella natans|Rep: DNA-directed RNA
polymerase I 40kDa subunit - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 293
Score = 40.7 bits (91), Expect = 0.020
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM-RHTLYPK 263
++ILI KL+ Q L L A+ KKG+ +H+K++P A + Y I+ ++ +Y K
Sbjct: 173 EDILITKLKPKQLLFLEAHCKKGYSTQHSKYSPVAAAWYLYYSTTILIKNLIYYK 227
>UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit D - Archaeoglobus fulgidus
Length = 264
Score = 39.9 bits (89), Expect = 0.035
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 284
D I +++L +GQ+L L A A+ G G+EHAK+ P + ++ P+ ++
Sbjct: 123 DNIPVLELFEGQQLMLEAVARLGTGREHAKFQPVSVCVYKIIPEIVV 169
>UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit D - Methanococcus jannaschii
Length = 191
Score = 39.1 bits (87), Expect = 0.060
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 418 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNI 287
I I+KL KGQ +++ A G GK HAKW P V + D +
Sbjct: 109 IPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAVYKQIADDEV 152
>UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase,
subunit D; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit D - Ignicoccus
hospitalis KIN4/I
Length = 283
Score = 38.7 bits (86), Expect = 0.080
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -2
Query: 505 DLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
D + +++ + + ED+ + I ++ L Q++K+ AYA+ G G+EHAKW P
Sbjct: 109 DASAEGKQIIVYSKDLKSEDEDVRPVYENIPVVPLIGDQKVKVIAYARLGRGREHAKWMP 168
>UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit 3,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 3, putative - Trypanosoma cruzi
Length = 363
Score = 38.7 bits (86), Expect = 0.080
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 430 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPD 257
E + ++ L + QEL LR +K K HAK+ P A V+ Y D ++ + K D
Sbjct: 160 EEHGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVATVAMRYASDIVLNPDGFAKLD 217
>UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 305
Score = 38.3 bits (85), Expect = 0.11
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 496 SSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 317
S D R PV S+ E D + +L+ +L +GQ++ K GK HAKW+P
Sbjct: 134 SDDIRWNPVGSQR--EIFRDVKFSSRVLMFRLARGQKISAELVCTKNVGKVHAKWSPVCP 191
Query: 316 VSFEYDP 296
++ P
Sbjct: 192 ATYRLMP 198
>UniRef50_Q8PV16 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit D - Methanosarcina mazei (Methanosarcina frisia)
Length = 266
Score = 38.3 bits (85), Expect = 0.11
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
V + DL SSDP++ P AD I I++L+KGQ+L L A A G+G++
Sbjct: 107 VYSRDLISSDPKIQP----------AD----PNIPIVELKKGQKLVLEAIAHMGYGRDSV 152
Query: 337 KWNPTAGVSFEY 302
KW AGV+ Y
Sbjct: 153 KWQ--AGVACGY 162
>UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit D - Sulfolobus solfataricus
Length = 265
Score = 37.9 bits (84), Expect = 0.14
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 338
+ + D+KS DP VVP++ +I I+ L Q++ L A + G+GKEHA
Sbjct: 109 IYSKDIKSEDPSVVPISG--------------DIPIVLLGTNQKISLEARLRLGYGKEHA 154
Query: 337 KWNPTAGVSFEYDP 296
K+ P + Y P
Sbjct: 155 KFIPVSLSVVRYYP 168
>UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia
intestinalis|Rep: GLP_301_28021_29001 - Giardia lamblia
ATCC 50803
Length = 326
Score = 37.5 bits (83), Expect = 0.18
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 430 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV 314
E I I+KL G+ + YA+K GK HAKW P A V
Sbjct: 142 ETPSIPILKLAPGESINALLYARKDRGKIHAKWCPAACV 180
>UniRef50_Q5KCD2 Cluster: Helicase, putative; n=2; Filobasidiella
neoformans|Rep: Helicase, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 397
Score = 37.5 bits (83), Expect = 0.18
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -2
Query: 436 YGEADEILIIKLRKGQELKLR-----AYAKKGFGKEHAKWNPTAG--VSFEYDPDNIMRH 278
Y A+++ + G L++R K G+GKE+A +NP G V +Y P+++++H
Sbjct: 287 YAAAEQLATMPPLPGVPLQIRNAPTQLMKKLGYGKEYA-YNPDYGHPVHNDYLPESLLQH 345
Query: 277 TLYPKPDEWPKSEHTELNEDQYEADFNWE 191
+ + S+H DQ+EAD W+
Sbjct: 346 SSHSHDP----SQHILKTADQFEADKKWD 370
>UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit D - Methanopyrus kandleri
Length = 275
Score = 37.5 bits (83), Expect = 0.18
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 508 ADLKSSDPRVVPVTSRHRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKW 332
A+L+ P V +R D D A + LI ++ + Q ++L A G G EHAKW
Sbjct: 101 AELEVEGP--TKVYARDLKFDHPDVEPAFPDTLITEVGEDQRIRLEVIAVPGLGLEHAKW 158
Query: 331 NPTAGVSFEYDPD 293
P + V ++ P+
Sbjct: 159 KPVSAVGYKGLPE 171
>UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third
largest subunit; n=1; Bigelowiella natans|Rep:
DNA-directed RNA polymerase II third largest subunit -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 291
Score = 36.7 bits (81), Expect = 0.32
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -2
Query: 484 RVVPVTSRHRD----EDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKW 332
RV P+ + D E++ + ILI+KL++ Q L ++ KKG G +H KW
Sbjct: 117 RVTPIGYSYYDKINQENKFNLVNYSHILILKLKQSQVLSMKITLKKGKGSDHTKW 171
>UniRef50_A0D910 Cluster: Chromosome undetermined scaffold_41, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_41,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1362
Score = 35.5 bits (78), Expect = 0.74
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = -2
Query: 490 DPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRA--YAKKGFGKEHAKWNPTAG 317
D R + +T+ H DE + A+ I I+ KGQ L + + Y K+ FG+ +
Sbjct: 508 DKRTIILTTHHLDEAEI---LANRIGIMS--KGQLLAVGSSDYIKRKFGEGY-------N 555
Query: 316 VSFEYDPDNIMRHTLYPK-----PDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVES 155
+ +D N+ R+T+ K P+ + +SEH+ N+ + F+ + K + FYN+ES
Sbjct: 556 LKLSFDDANL-RNTIQEKVYQMVPNSYLESEHSNNNKLVFNIPFSSKGKLSDLFYNLES 613
>UniRef50_Q00813 Cluster: DNA-directed RNA polymerase subunit D;
n=5; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit D - Haloarcula marismortui (Halobacterium
marismortui)
Length = 259
Score = 35.5 bits (78), Expect = 0.74
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 27/131 (20%)
Frame = -2
Query: 424 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV---------------SFEYDPDN 290
D I II L++GQ L++ A A G+EHAK V FE D N
Sbjct: 113 DNIPIIDLKEGQRLEVEADAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPN 172
Query: 289 IMRHTLYPKPDEWPKSEHTE---LNEDQYEADF--NWEAK-------PNKFFYNVESSGA 146
I+R + + E + T + D+++ D + K PN F ++VE+ G+
Sbjct: 173 ILRGVIEEQAAEHAAGDATNGELVATDEFDNDLRNRYPGKDVEVSDVPNAFVFHVETDGS 232
Query: 145 LKPENIVLMGI 113
E +VL +
Sbjct: 233 FTTEELVLRAV 243
>UniRef50_Q18767 Cluster: Putative uncharacterized protein srsx-30;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein srsx-30 - Caenorhabditis elegans
Length = 304
Score = 34.7 bits (76), Expect = 1.3
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 97 CFSVQLFPLIQYFLV*ELLMILHYKRICLVSLPS*SPPHTDLH*VQCARFWAIHLVLDIT 276
C+ + + P+I L LLM + R+ VS P + +L Q + +IHL+ I
Sbjct: 80 CYMLNVLPVIGLTLAAPLLMQIGLDRLLAVSFPI---RYRELQ-FQKLFYTSIHLIFPIL 135
Query: 277 Y-VSLYYQGHIQRTHQQL 327
Y +S+ Y G ++R ++Q+
Sbjct: 136 YTISILYLGFLERNNEQV 153
>UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_305_30255_31307 - Giardia lamblia
ATCC 50803
Length = 350
Score = 33.9 bits (74), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 326
+IL+ KL GQ + Y KG G+ HAK+ P
Sbjct: 181 DILLAKLAPGQRIFCEIYCHKGIGRMHAKFQP 212
>UniRef50_UPI00015B5019 Cluster: PREDICTED: similar to GA20163-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA20163-PA - Nasonia vitripennis
Length = 843
Score = 33.5 bits (73), Expect = 3.0
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = -2
Query: 499 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAK--KGFGKEHAKWNP 326
K ++ + ++ + E ++++ +K K +L L+A ++ + K H NP
Sbjct: 389 KPNERKTQEKQNKKQTEKDGKNNLSEDVEDVKALKKSKLMLQAKSRLYEKLAKSHNNMNP 448
Query: 325 TAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNW 194
V FE+ PD+ H+ +E K+ NE Y++D W
Sbjct: 449 NFLVDFEHKPDS-SDHS----EEENSKNNGVNENESDYDSDDGW 487
>UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain;
n=1; Guillardia theta|Rep: DNA-directed RNA polymerase
40k chain - Guillardia theta (Cryptomonas phi)
Length = 339
Score = 33.5 bits (73), Expect = 3.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 421 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 296
+ILI+K+ GQE+ + G HAK++P + + +P
Sbjct: 182 DILILKINPGQEIHCECHCLINSGLNHAKFSPVGTIFYRMEP 223
>UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosaeta
thermophila PT|Rep: RNA polymerase, insert -
Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 264
Score = 33.5 bits (73), Expect = 3.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 475 PVTSRHRD---EDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKW 332
P T RD D + D I ++ L +G++L + +A GKEHAKW
Sbjct: 102 PATVHSRDIKFSDPSVRAAFDNIPLVVLGEGEKLVIEGFATLRTGKEHAKW 152
>UniRef50_UPI00006C1172 Cluster: PREDICTED: hypothetical protein;
n=2; Homo/Pan/Gorilla group|Rep: PREDICTED: hypothetical
protein - Homo sapiens
Length = 274
Score = 33.1 bits (72), Expect = 4.0
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 304 YDPD-NIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPE 134
+DP ++ TL P+ P + H+ L+ +Q + NW A+P++ Y+++ G + E
Sbjct: 3 FDPALGLLTPTLCPEVSPPPPTSHSPLSSEQTQGKKNWTARPSR-QYDIKKRGGEEEE 59
>UniRef50_Q7KTG2 Cluster: CG15828-PB, isoform B; n=5; Eukaryota|Rep:
CG15828-PB, isoform B - Drosophila melanogaster (Fruit
fly)
Length = 4374
Score = 33.1 bits (72), Expect = 4.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 361 KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 239
K FGK HA W+ + FEY+ + HTL+ W K+E
Sbjct: 1671 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1707
>UniRef50_Q3A071 Cluster: Cation-multidrug efflux pump; n=6;
Bacteria|Rep: Cation-multidrug efflux pump - Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 1025
Score = 32.3 bits (70), Expect = 6.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 517 VTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYA 365
+TT + + D V+PVT R D+ D+G+ + I R GQ + L+ A
Sbjct: 741 ITTTEYREQD-EVIPVTLRSTAADRQDFGKLETHNIYVQRTGQSVPLKQVA 790
>UniRef50_Q2HB13 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 370
Score = 32.3 bits (70), Expect = 6.9
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = -2
Query: 484 RVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 305
RV + R+E+QA E +EI + R +L ++ KG GKE A+ + +
Sbjct: 245 RVPSLEDLRREEEQAAKEEYEEIER-RRRAAAQLAMQ----KGLGKEDAETRNKFDEAAD 299
Query: 304 YDPDNIMRHTLYPKPDEWPKSEHTELNEDQYE 209
P+N RHT P D P + +D+ E
Sbjct: 300 DTPNNQPRHT--PAEDLAPNGRRDTMEDDELE 329
>UniRef50_P48969 Cluster: Protein DVR-1 homolog precursor; n=4;
Echinoida|Rep: Protein DVR-1 homolog precursor -
Strongylocentrotus purpuratus (Purple sea urchin)
Length = 461
Score = 32.3 bits (70), Expect = 6.9
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 247 WAIHLVLDITYVSLYYQGHIQ-RTHQQLDSILHALSQNLFLHMPEASIPDPC 399
W ++ + YV+ Y QG + ++ HA+ Q L HM + +P PC
Sbjct: 374 WQEWIIAPLGYVAFYCQGECAFPLNGHANATNHAIVQTLVHHMSPSHVPQPC 425
>UniRef50_Q8FTG7 Cluster: Putative uncharacterized protein; n=7;
Actinobacteria (class)|Rep: Putative uncharacterized
protein - Corynebacterium efficiens
Length = 271
Score = 31.9 bits (69), Expect = 9.2
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = -2
Query: 493 SDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV 314
+DP+++ V RH D+ + + + L+K QEL LR +
Sbjct: 65 ADPKILAVNERHGDDHAVNLTKL-RAVAKDLKKNQELALRLWDSGDTAGRLVSLLICRPK 123
Query: 313 SFEYDP-DNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPN 179
F D D+++R PK +W + + + D E +W A P+
Sbjct: 124 EFSTDQLDSMIREARTPKVTDWLINYVVKKHPDWDELRRHWLADPD 169
>UniRef50_Q3E0S1 Cluster: Putative uncharacterized protein; n=1;
Chloroflexus aurantiacus J-10-fl|Rep: Putative
uncharacterized protein - Chloroflexus aurantiacus
J-10-fl
Length = 296
Score = 31.9 bits (69), Expect = 9.2
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -2
Query: 454 DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHT 275
+E +A+Y +A L++++ + +L+LRAY KE A++ A V + + I R
Sbjct: 47 EERRAEYEKAHNRLVVRMNELNDLRLRAYDTI---KEAAEFLKRAKVKKRHLAERIARPR 103
Query: 274 LYPKPDEW 251
L +PD W
Sbjct: 104 L-EQPDNW 110
>UniRef50_A6G3J0 Cluster: DNA-methyltransferase-like protein; n=1;
Plesiocystis pacifica SIR-1|Rep:
DNA-methyltransferase-like protein - Plesiocystis
pacifica SIR-1
Length = 1245
Score = 31.9 bits (69), Expect = 9.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 430 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 320
+ +LI+ + G+ K RA AKK K H KW A
Sbjct: 503 QVQTVLIVAAKPGERKKERAMAKKSKSKAHPKWRIAA 539
>UniRef50_A3ZYV7 Cluster: Iduronate-2-sulfatase; n=1;
Blastopirellula marina DSM 3645|Rep:
Iduronate-2-sulfatase - Blastopirellula marina DSM 3645
Length = 469
Score = 31.9 bits (69), Expect = 9.2
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = -2
Query: 427 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWP 248
AD +L I+ R Q K + GF K H +N +YDPD I H D+ P
Sbjct: 163 ADAVLAIRERAAQ--KQPFFLAVGFWKPHLPFNAPKPYWDKYDPDQIRAHL-----DQLP 215
Query: 247 KSEHTEL 227
KS+ ++
Sbjct: 216 KSDAPQI 222
>UniRef50_Q4WFJ1 Cluster: Glycosyl hydrolase, putative; n=18;
Trichocomaceae|Rep: Glycosyl hydrolase, putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 510
Score = 31.9 bits (69), Expect = 9.2
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 299 VIFKGHTSSWIPF-CMLFPKTFFCICPKLQ 385
++FKG +SW+ F +L P T+ I PKLQ
Sbjct: 365 ILFKGLVTSWLAFTALLVPSTYDRILPKLQ 394
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,949,963
Number of Sequences: 1657284
Number of extensions: 9416417
Number of successful extensions: 25085
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 24445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25067
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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